Strain identifier

BacDive ID: 140507

Type strain: Yes

Species: Achromobacter kerstersii

NCBI tax ID(s): 1353890 (species)

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General

@ref: 43168

BacDive-ID: 140507

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Achromobacter kerstersii CCUG 62449 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 1353890
  • Matching level: species

doi: 10.13145/bacdive140507.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Alcaligenaceae
  • genus: Achromobacter
  • species: Achromobacter kerstersii
  • full scientific name: Achromobacter kerstersii Vandamme et al. 2016

@ref: 43168

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Achromobacter

species: Achromobacter kerstersii

type strain: yes

Morphology

cell morphology

  • @ref: 43168
  • gram stain: negative
  • cell length: 0.9-1.5 µm
  • cell width: 0.4-0.7 µm
  • cell shape: rod-shaped
  • motility: yes

colony morphology

@refcolony sizecolony colorincubation periodmedium used
431681-1.5 mmnon-pigmented2 daystrypticase soy agar (TSA)
628501 day

Culture and growth conditions

culture medium

@refnamegrowth
43168trypticase soy agar (TSA)yes
43168cetrimide agaryes
43168Drigalsky agaryes
43168blood agaryes

culture temp

@refgrowthtypetemperaturerange
43168positivegrowth37mesophilic
43168positivegrowth30mesophilic
62850positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
43168aerobe
62850aerobe

halophily

@refsaltgrowthtested relationconcentration
43168NaClpositivegrowth3 %
43168NaClpositivegrowth4.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4316816301nitrite-reduction
4316827856acetamide-growth
4316830849L-arabinose-assimilation
4316816024D-mannose-assimilation
43168506227N-acetylglucosamine-assimilation
4316817306maltose-assimilation
4316817634D-glucose-assimilation
4316827689decanoate+/-assimilation
431688391D-gluconate+assimilation
4316817128adipate+assimilation
4316815589L-malate+assimilation
4316816947citrate+assimilation
4316818401phenylacetate+assimilation
4316816004(R)-lactate+assimilation
431684853esculin-hydrolysis
4316853426tween 80-hydrolysis
431685291gelatin-hydrolysis
4316817234glucose-assimilation
4316827082trehalose-assimilation
4316816467L-arginine-assimilation
4316836405norleucine-assimilation
4316816899D-mannitol-assimilation
4316817992sucrose-assimilation
4316817632nitrate+reduction

metabolite production

@refChebi-IDmetaboliteproduction
4316835581indoleno
4316816136hydrogen sulfideno

enzymes

@refvalueactivityec
43168alkaline phosphatase+3.1.3.1
43168esterase (C 4)+
43168acid phosphatase+3.1.3.2
43168phosphoamidase-3.9.1.1
43168beta-glucosidase-3.2.1.21
43168cytochrome oxidase+1.9.3.1
43168catalase+1.11.1.6
43168leucine arylamidase+3.4.11.1
43168amylase-
43168lysine decarboxylase-4.1.1.18
43168ornithine decarboxylase-4.1.1.17
43168arginine dihydrolase-3.5.3.6
43168urease-3.5.1.5
43168DNase-
43168tryptophanase-4.1.99.1
43168esterase Lipase (C 8)-
43168lipase (C 14)-
43168valine arylamidase-
43168cystine arylamidase-3.4.11.3
43168trypsin-3.4.21.4
43168chymotrypsin-3.4.4.5
43168alpha-galactosidase-3.2.1.22
43168beta-galactosidase-3.2.1.23
43168beta-glucuronidase-3.2.1.31
43168alpha-glucosidase-3.2.1.20
43168N-acetyl-beta-glucosaminidase-3.2.1.52
43168alpha-mannosidase-3.2.1.24
43168alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageSD
    43168C12:01.10.06
    43168C12:0 2OH3.050.4
    43168C14:03.90.66
    43168C16:028.451.18
    43168C17:0 cyclo11.324.65
    43168C18:01.070.27
    43168C18:1ω7c10.320.59
    43168C16:1 iso I / C14:0 3OH9.130.76
    43168C15:0 iso 2OH / C16:1ω7c30.15.1
  • type of FA analysis: whole cell analysis
  • incubation medium: trypticase soy agar (TSA; BBL)
  • incubation temperature: 28
  • incubation time: 1
  • system: MIS MIDI
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample type
43168soil
62850Soil

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_954.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_7;96_9;97_9;98_570;99_954&stattab=map
  • Last taxonomy: Achromobacter
  • 16S sequence: HG324052
  • Sequence Identity:
  • Total samples: 7288
  • soil counts: 1429
  • aquatic counts: 1212
  • animal counts: 2896
  • plant counts: 1751

Sequence information

16S sequences

  • @ref: 43168
  • description: Achromobacter kerstersii partial 16S rRNA gene, strain LMG 3441
  • accession: HG324052
  • length: 1483
  • database: nuccore
  • NCBI tax ID: 1353890

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Achromobacter kerstersii LMG 3441GCA_902859595contigncbi1353890
66792Achromobacter kerstersii strain LMG 34411353890.3wgspatric1353890
66792Achromobacter kerstersii LMG 34412921339674draftimg1353890

GC content

  • @ref: 43168
  • GC-content: 63.7
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes88.479yes
gram-positiveno98.261yes
anaerobicno98.307no
halophileno90.95no
spore-formingno94.125no
thermophileno99.616yes
glucose-utilno66.677yes
flagellatedno65.504no
aerobicyes87.114yes
glucose-fermentno90.47no

External links

@ref: 43168

culture collection no.: CCUG 62449, LMG 3441

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny27373279Taxonomic dissection of Achromobacter denitrificans Coenye et al. 2003 and proposal of Achromobacter agilis sp. nov., nom. rev., Achromobacter pestifer sp. nov., nom. rev., Achromobacter kerstersii sp. nov. and Achromobacter deleyi sp. nov.Vandamme PA, Peeters C, Inganas E, Cnockaert M, Houf K, Spilker T, Moore ERB, LiPuma JJInt J Syst Evol Microbiol10.1099/ijsem.0.0012542016Achromobacter/*classification, Achromobacter denitrificans/*classification, Bacterial Typing Techniques, DNA, Bacterial/genetics, Genes, Bacterial, Multilocus Sequence Typing, *Phylogeny, Sequence Analysis, DNATranscriptome
Phylogeny33263590Production of glycolipid biosurfactant during crude oil degradation by the novel indigenous isolated Achromobacter kerstersii LMG3441.Kazemzadeh S, Naghavi NS, Emami-Karvani Z, Emtiazi G, Fouladgar MWater Sci Technol10.2166/wst.2020.4742020Achromobacter, Biodegradation, Environmental, Glycolipids, Iran, Klebsiella, *Petroleum, Surface-Active AgentsBiotechnology

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43168Peter A. Vandamme, Charlotte Peeters, Elisabeth Inganäs, Margo Cnockaert, Kurt Houf, Theodore Spilker, Edward R. B. Moore, John J. LiPumaTaxonomic dissection of Achromobacter denitrificans Coenye et al. 2003 and proposal of Achromobacter agilis sp. nov., nom. rev., Achromobacter pestifer sp. nov., nom. rev., Achromobacter kerstersii sp. nov. and Achromobacter deleyi sp. nov.10.1099/ijsem.0.001254IJSEM 66: 3708-3717 201627373279
62850Curators of the CCUGhttps://www.ccug.se/strain?id=62449Culture Collection University of Gothenburg (CCUG) (CCUG 62449)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/