Strain identifier

BacDive ID: 140499

Type strain: Yes

Species: Zeaxanthinibacter aestuarii

Strain Designation: S2-22

Strain history: C. O. Jeon; Chung-Ang Univ., South Korea; S2-22.

NCBI tax ID(s): 1796906 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 8.1 (current version)

General

@ref: 43117

BacDive-ID: 140499

keywords: 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, rod-shaped, colony-forming, pigmented

description: Zeaxanthinibacter aestuarii S2-22 is an obligate aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and has a orange-yellow pigmentation.

NCBI tax id

  • NCBI tax id: 1796906
  • Matching level: species

strain history

  • @ref: 67770
  • history: C. O. Jeon; Chung-Ang Univ., South Korea; S2-22.

doi: 10.13145/bacdive140499.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Zeaxanthinibacter
  • species: Zeaxanthinibacter aestuarii
  • full scientific name: Zeaxanthinibacter aestuarii Lee et al. 2016

@ref: 43117

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Zeaxanthinibacter

species: Zeaxanthinibacter aestuarii

strain designation: S2-22

type strain: yes

Morphology

cell morphology

  • @ref: 43117
  • gram stain: negative
  • cell length: 2.5-6.0 µm
  • cell width: 0.3-0.7 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 43117
  • colony color: yellow
  • colony shape: circular
  • medium used: marine agar (MA)

pigmentation

  • @ref: 43117
  • production: yes
  • color: orange-yellow
  • name: zeaxanthin (Carotenoid)

Culture and growth conditions

culture medium

@refnamegrowth
43117marine agar (MA)yes
43117nutritient agar (NA)no
43117LB (Luria-Bertani) MEDIUMno
43117tryptic soy agar (TSA)no
43117Reasoner's 2A agar (R2A)no

culture temp

@refgrowthtypetemperaturerange
43117positiveoptimum35-37mesophilic
43117positivegrowth15-43
67770positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
43117positivegrowth5.5-9.0alkaliphile
43117positiveoptimum6.5-7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 43117
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
43117NaClpositivegrowth0-10 %(w/v)
43117NaClpositiveoptimum2 %(w/v)

observation

  • @ref: 67770
  • observation: quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4311753424tween 20+hydrolysis
4311753426tween 80+hydrolysis
4311718186tyrosine+hydrolysis
431174853esculin+hydrolysis
43117casein-hydrolysis
4311728017starch-hydrolysis
431175291gelatin-hydrolysis
4311785146carboxymethylcellulose-hydrolysis
4311717029chitin-hydrolysis
4311717632nitrate+reduction
4311717634D-glucose+assimilation
4311730849L-arabinose+assimilation
4311716024D-mannose+assimilation
4311716899D-mannitol+assimilation
43117506227N-acetylglucosamine+assimilation
4311717306maltose+assimilation
4311732032potassium gluconate+assimilation
4311725115malate+assimilation
4311753258sodium citrate+assimilation
4311727689decanoate-assimilation
4311717128adipate-assimilation
4311718401phenylacetate-assimilation
4311740585alpha-cyclodextrin+oxidation
4311753426tween 80+oxidation
43117506227N-acetylglucosamine+oxidation
4311730849L-arabinose+oxidation
4311718333D-arabitol+oxidation
4311717057cellobiose+oxidation
4311717113erythritol+oxidation
4311715824D-fructose+oxidation
4311728120L-fructose+oxidation
4311712936D-galactose+oxidation
4311728066gentiobiose+oxidation
4311717925alpha-D-glucose+oxidation
431176359lactulose+oxidation
4311717306maltose+oxidation
4311716899D-mannitol+oxidation
4311716024D-mannose+oxidation
43117320055methyl beta-D-glucopyranoside+oxidation
4311727605D-psicose+oxidation
4311716634raffinose+oxidation
4311762345L-rhamnose+oxidation
4311717924D-sorbitol+oxidation
4311716551D-trehalose+oxidation
4311732528turanose+oxidation
4311717151xylitol+oxidation
4311751850methyl pyruvate+oxidation
4311730089acetate+oxidation
4311716383cis-aconitate+oxidation
4311716947citrate+oxidation
4311715748D-glucuronate+oxidation
43117645522-hydroxybutyrate+oxidation
43117370543-hydroxybutyrate+oxidation
43117309162-oxoglutarate+oxidation
43117286442-oxopentanoate+oxidation
4311724996lactate+oxidation
4311715792malonate+oxidation
4311773706bromosuccinate+oxidation
4311721217L-alaninamide+oxidation
4311717196L-asparagine+oxidation
4311729991L-aspartate+oxidation
4311729985L-glutamate+oxidation
4311773804glycyl L-aspartic acid+oxidation
4311715971L-histidine+oxidation
4311715603L-leucine+oxidation
4311715729L-ornithine+oxidation
4311717295L-phenylalanine+oxidation
4311717203L-proline+oxidation
4311716857L-threonine+oxidation
4311717126DL-carnitine+oxidation
4311717748thymidine+oxidation
4311750048phenylethylamine+oxidation
4311717148putrescine+oxidation
43117620642,3-butanediol+oxidation
4311717754glycerol+oxidation
4311714336glycerol 1-phosphate+oxidation
4311729042glucose 1-phosphate+oxidation
4311723652dextrin-oxidation
4311728087glycogen-oxidation
4311753423tween 40-oxidation
4311728037N-acetylgalactosamine-oxidation
4311715963ribitol-oxidation
4311717268myo-inositol-oxidation
4311736219alpha-lactose-oxidation
4311728053melibiose-oxidation
4311717992sucrose-oxidation
4311775146monomethyl succinate-oxidation
4311715740formate-oxidation
4311715895D-galactonic acid lactone-oxidation
4311718024D-galacturonic acid-oxidation
431178391D-gluconate-oxidation
4311717784D-glucosaminic acid-oxidation
43117167244-hydroxybutyrate-oxidation
43117181014-hydroxyphenylacetic acid-oxidation
4311717240itaconate-oxidation
43117167632-oxobutanoate-oxidation
4311717272propionate-oxidation
4311726490quinate-oxidation
4311733801D-saccharate-oxidation
4311741865sebacic acid-oxidation
43117143136succinamate-oxidation
4311732323glucuronamide-oxidation
4311715570D-alanine-oxidation
4311716977L-alanine-oxidation
4311773786L-alanylglycine-oxidation
4311773784glycyl-l-glutamate-oxidation
43117182404-hydroxy-L-proline-oxidation
4311718183L-pyroglutamic acid-oxidation
4311716523D-serine-oxidation
4311717115L-serine-oxidation
4311716865gamma-aminobutyric acid-oxidation
4311727248urocanic acid-oxidation
4311717596inosine-oxidation
4311716704uridine-oxidation
4311716000ethanolamine-oxidation
4311714314D-glucose 6-phosphate-oxidation

metabolite production

  • @ref: 43117
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
43117cytochrome oxidase+1.9.3.1
43117catalase+1.11.1.6
43117alkaline phosphatase+3.1.3.1
43117esterase (C 4)+
43117esterase Lipase (C 8)+
43117leucine arylamidase+3.4.11.1
43117valine arylamidase+
43117cystine arylamidase+3.4.11.3
43117trypsin+3.4.21.4
43117acid phosphatase+3.1.3.2
43117naphthol-AS-BI-phosphohydrolase+
43117alpha-galactosidase+3.2.1.22
43117beta-galactosidase+3.2.1.23
43117alpha-glucosidase+3.2.1.20
43117beta-glucosidase+3.2.1.21
43117N-acetyl-beta-glucosaminidase+3.2.1.52
43117lipase (C 14)-
43117alpha-chymotrypsin-3.4.21.1
43117beta-glucuronidase-3.2.1.31
43117alpha-mannosidase-3.2.1.24
43117alpha-fucosidase-3.2.1.51
43117arginine dihydrolase-3.5.3.6
43117urease-3.5.1.5

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    43117C16:01.5
    43117C15:1ω6c2.5
    43117C17:1ω6c1.1
    43117C15:0 iso33.7
    43117C15:1 iso G13.1
    43117C15:0 iso 3OH6.5
    43117C17:0 iso 3OH17.1
    43117C16:1ω7c / C16:1ω6c14
    43117iso-C17:1 I/anteiso-C17:1 B1.4
    43117C17:1 iso ω9c / C16:0 10-methyl4
  • type of FA analysis: whole cell analysis
  • incubation medium: marine broth (MB)
  • agar/liquid: liquid
  • incubation temperature: 37
  • software version: Sherlock 6.0B
  • system: MIS MIDI
  • instrument: model 6890, Hewlett Packard
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeenrichment cultureenrichment culture durationenrichment culture temperatureisolation procedure
43117estuary sediment sampleAsanRepublic of KoreaKORAsia36126marine agar 2216 (MA; BD)5 days30serial dilution plating method
67770Estuary sedimentRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Estuary
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_161548.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_411;96_1865;97_2241;98_2749;99_161548&stattab=map
  • Last taxonomy: Zeaxanthinibacter aestuarii subclade
  • 16S sequence: KU667250
  • Sequence Identity:
  • Total samples: 144
  • soil counts: 53
  • aquatic counts: 91

Sequence information

16S sequences

  • @ref: 43117
  • description: Zeaxanthinibacter sp. S2-22 16S ribosomal RNA gene, partial sequence
  • accession: KU667250
  • length: 1448
  • database: nuccore
  • NCBI tax ID: 1796906

GC content

@refGC-contentmethod
4311745.5Thermal denaturation, fluorometry
6777045.5thermal denaturation, midpoint method (Tm)

External links

@ref: 43117

culture collection no.: KACC 18503, JCM 31155

literature

  • topic: Phylogeny
  • Pubmed-ID: 27220982
  • title: Zeaxanthinibacter aestuarii sp. nov., isolated from estuary sediment and emended description of the genus Zeaxanthinibacter Asker et al. 2007.
  • authors: Lee Y, Jeong HI, Jeong SE, Jeon CO
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001185
  • year: 2016
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Estuaries, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Geologic Sediments/microbiology, Phosphatidylethanolamines/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43117Yunhee Lee, Hye Im Jeong, Sang Eun Jeong, Che Ok JeonZeaxanthinibacter aestuarii sp. nov., isolated from estuary sediment and emended description of the genus Zeaxanthinibacter Asker et al. 200710.1099/ijsem.0.001185IJSEM 66: 3264-3269 201627220982
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/