Strain identifier

BacDive ID: 140490

Type strain: Yes

Species: Actinomadura montaniterrae

Strain Designation: CYP1-1B

Culture col. no.: JCM 16995, KCTC 39784, PCU 349, TISTR 2400

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@ref: 43102

BacDive-ID: 140490

keywords: gram-positive, spore-forming, aerobe, Bacteria, 16S sequence, genome sequence

description: Actinomadura montaniterrae CYP1-1B is an aerobe, spore-forming, gram-positive bacterium that builds a substrate mycelium and was isolated from mountain soil sample.

doi: 10.13145/bacdive140490.20201210.5

Name and taxonomic classification


  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Streptosporangiales
  • family: Thermomonosporaceae
  • genus: Actinomadura
  • species: Actinomadura montaniterrae
  • full scientific name: Actinomadura montaniterrae Songsumanus et al. 2016

@ref: 43102

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Streptosporangiales

family: Thermomonosporaceae

genus: Actinomadura

species: Actinomadura montaniterrae

strain designation: CYP1-1B

type strain: yes


cell morphology

  • @ref: 43102
  • gram stain: positive

colony morphology

  • @ref: 43102
  • colony color: dark greyish yellow
  • medium used: ISP 2

multicellular morphology

@refforms multicellular complexcomplex namecomplex colormedium namefurther description
43102yessubstrate myceliumdark greyish yellowISP2extensively branched non-fragmenting substrate mycelium
43102yesaerial myceliumpale greenISP2

Culture and growth conditions

culture medium

43102ISP 7yes
43102nutritient agar (NA)yes
43102ISP 2yes

culture temp

  • @ref: 43102
  • growth: positive
  • type: growth
  • temperature: 20-45

culture pH

  • @ref: 43102
  • ability: positive
  • type: growth
  • pH: 4.5-8.0

Physiology and metabolism

oxygen tolerance

  • @ref: 43102
  • oxygen tolerance: aerobe

spore formation

  • @ref: 43102
  • spore description: oval to ellipsoid spores formed along the sporogenous hyphae and its branches
  • spore formation: yes


  • @ref: 43102
  • salt: NaCl
  • growth: positive
  • tested relation: maximum
  • concentration: 5 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4310217634D-glucose+carbon source
4310216899D-mannitol+carbon source
4310262345L-rhamnose+carbon source
4310217716lactose+carbon source
4310230849L-arabinose+carbon source
4310215824D-fructose+carbon source
4310217057cellobiose+carbon source
4310217992sucrose+carbon source
4310265327D-xylose+carbon source
4310212936D-galactose-carbon source
4310217754glycerol-carbon source
4310228053melibiose-carbon source
4310216634raffinose-carbon source
4310216988D-ribose-carbon source
4310217814salicin-carbon source

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    43102C16:0 10-methyl1.9
    43102C18:0 10-methyl19
    43102C16:0 2OH10.5
  • type of FA analysis: whole cell analysis
  • incubation medium: ISP 2
  • agar/liquid: liquid
  • incubation temperature: 30
  • incubation time: 7
  • software version: Sherlock 6.0
  • system: MIS MIDI

Isolation, sampling and environmental information


  • @ref: 43102
  • sample type: mountain soil sample
  • geographic location: Chaiyaphum Province
  • country: Thailand
  • THA
  • continent: Asia
  • enrichment culture: starch casein nitrate agar
  • enrichment culture composition: supplemented with nystatin (50 mg/l) and nalidixic acid (20 mg/l)
  • enrichment culture duration: 21 days
  • enrichment culture temperature: 30

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Sequence information

16S sequences

  • @ref: 43102
  • description: Actinomadura sp. CYP1-1B gene for 16S ribosomal RNA, partial sequence
  • accession: LC126428
  • length: 1488
  • database: nuccore
  • NCBI tax ID: 1803903

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Actinomadura montaniterrae CYP1-1BGCA_008923365scaffoldncbi1803903
66792Actinomadura montaniterrae strain CYP1-1B1803903.3wgspatric1803903

GC content

  • @ref: 43102
  • GC-content: 74.3
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 43102

culture collection no.: JCM 16995, KCTC 39784, PCU 349, TISTR 2400


20215D.Gleim, M.Kracht, N.Weiss et. al.Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
43102Apakorn Songsumanus, Takuji Kudo, Moriya Ohkuma, Wongsakorn Phongsopitanun, Somboon TanasupawatActinomadura montaniterrae sp. nov., isolated from mountain soil10.1099/ijsem.0.001196IJSEM 66: 3310-3316 2016
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)