Strain identifier

BacDive ID: 140480

Type strain: Yes

Species: Paracoccus hibisci

Strain Designation: THG-T2.8

NCBI tax ID(s): 2010990 (species)

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General

@ref: 43256

BacDive-ID: 140480

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped, colony-forming

description: Paracoccus hibisci THG-T2.8 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from soil sample from rhizosphere of a Mugunghwa flower.

NCBI tax id

  • NCBI tax id: 2010990
  • Matching level: species

doi: 10.13145/bacdive140480.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Paracoccaceae
  • genus: Paracoccus
  • species: Paracoccus hibisci
  • full scientific name: Paracoccus hibisci Yan et al. 2017

@ref: 43256

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Paracoccus

species: Paracoccus hibisci

strain designation: THG-T2.8

type strain: yes

Morphology

cell morphology

  • @ref: 43256
  • gram stain: negative
  • cell length: 1.2-1.4 µm
  • cell width: 0.6-0.7 µm
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: monotrichous

colony morphology

  • @ref: 43256
  • colony color: orange
  • colony shape: circular
  • medium used: trypticase soy agar (TSA)

Culture and growth conditions

culture medium

@refnamegrowth
43256trypticase soy agar (TSA)yes
43256Luria Bertani agar (LA; Oxoid)yes
43256Reasoner's 2A agar (R2A)yes
43256marine agar (MA)yes
43256nutritient agar (NA)yes
43256MacConkey agar (MCA)no

culture temp

@refgrowthtypetemperaturerange
43256positiveoptimum28mesophilic
43256positivegrowth10-37

culture pH

@refabilitytypepH
43256positivegrowth6-8
43256positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 43256
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
43256NaClpositivegrowth0-5 %
43256NaClpositiveoptimum1 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4325617632nitrate-reduction
4325628017starch+hydrolysis
4325616991dna+hydrolysis
432565291gelatin+hydrolysis
4325617895L-tyrosine-hydrolysis
43256casein-hydrolysis
4325653426tween 80-hydrolysis
4325617029chitin-hydrolysis
4325653424tween 20-hydrolysis
4325662968cellulose-hydrolysis
4325617790methanol+growth
4325616830methylamine+growth
4325616024D-mannose+assimilation
4325625115malate+assimilation
4325616947citrate+assimilation
4325616899D-mannitol+assimilation
4325617634D-glucose+assimilation
4325618287L-fucose+assimilation
4325617924D-sorbitol+assimilation
4325630849L-arabinose+assimilation
4325617272propionate+assimilation
4325653258sodium citrate+assimilation
4325616988D-ribose+assimilation
4325617992sucrose+assimilation
4325632954sodium acetate+assimilation
4325624996lactate+assimilation
4325616977L-alanine+assimilation
4325617115L-serine+assimilation
4325617128adipate-assimilation
4325618401phenylacetate-assimilation
4325628053melibiose-assimilation
4325627689decanoate-assimilation
4325615971L-histidine-assimilation
4325631011valerate-assimilation
43256168082-dehydro-D-gluconate-assimilation
43256370543-hydroxybutyrate-assimilation
43256178794-hydroxybenzoate-assimilation
4325617203L-proline-assimilation
4325662345L-rhamnose-assimilation
43256506227N-acetylglucosamine-assimilation
4325617268myo-inositol-assimilation
4325617306maltose-assimilation
4325617240itaconate-assimilation
432569300suberic acid-assimilation
4325662983sodium malonate-assimilation
43256581435-dehydro-D-gluconate-assimilation
4325628087glycogen-assimilation
43256161933-hydroxybenzoate-assimilation
4325617234glucose-builds acid from

metabolite production

  • @ref: 43256
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
43256catalase+1.11.1.6
43256urease+3.5.1.5
43256alkaline phosphatase+3.1.3.1
43256esterase (C 4)+
43256esterase Lipase (C 8)+
43256arginine dihydrolase+3.5.3.6
43256leucine arylamidase+3.4.11.1
43256valine arylamidase+
43256cystine arylamidase+3.4.11.3
43256trypsin+3.4.21.4
43256acid phosphatase+3.1.3.2
43256alpha-glucosidase+3.2.1.20
43256beta-glucosidase+3.2.1.21
43256lipase (C 14)-
43256alpha-chymotrypsin-3.4.21.1
43256naphthol-AS-BI-phosphohydrolase-
43256beta-galactosidase-3.2.1.23
43256beta-glucuronidase-3.2.1.31
43256alpha-galactosidase-3.2.1.22
43256N-acetyl-beta-glucosaminidase-3.2.1.52
43256alpha-fucosidase-3.2.1.51
43256alpha-mannosidase-3.2.1.24
43256cytochrome oxidase-1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 43256
  • sample type: soil sample from rhizosphere of a Mugunghwa flower
  • sampling date: 2015-10-05
  • geographic location: Kyung Hee University, Yongin
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia
  • latitude: 37
  • longitude: 127
  • enrichment culture: tryptone soya agar (TSA; Oxoid)
  • enrichment culture duration: 1 week
  • enrichment culture temperature: 30
  • isolation procedure: serial dilution plating technique

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Shrub (Scrub)
#Host Body-Site#Plant#Rhizosphere

Sequence information

16S sequences

  • @ref: 43256
  • description: Paracoccus sp. strain THG-T2.8 16S ribosomal RNA gene, partial sequence
  • accession: KX456189
  • length: 1347
  • database: nuccore
  • NCBI tax ID: 2010990

GC content

  • @ref: 43256
  • GC-content: 65.5
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 43256

culture collection no.: KACC 18932, CCTCC AB 2016181

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny28598318Paracoccus hibisci sp. nov., isolated from the rhizosphere of Hibiscus syriacus L. (Mugunghwa flower).Yan ZF, Moya G, Lin P, Won KH, Yang JE, Li CT, Kook M, Wang QJ, Yi THInt J Syst Evol Microbiol10.1099/ijsem.0.0018742017Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Hibiscus/*microbiology, Nucleic Acid Hybridization, Paracoccus/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistryTranscriptome
Phylogeny36129740Paracoccus everestensis sp. nov., a novel bacterium with great antioxidant capacity isolated from the north slope of Mount Everest.Cui X, Liu Y, Xu Y, Chen T, Zhang S, Wang J, Yang R, Liu G, Zhang W, Zhang GInt J Syst Evol Microbiol10.1099/ijsem.0.0055622022*Antioxidants, Bacterial Typing Techniques, Base Composition, Cardiolipins, Catalase/genetics, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Nucleotides, *Paracoccus, Phosphatidylcholines, Phosphatidylethanolamines, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride, Vitamin K 2Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43256Zheng-Fei Yan, Gabriela Moya, Pei Lin, Kyung-Hwa Won, Jung-Eun Yang, Chang-Tian Li, MooChang Kook, Qi-Jun Wang, Tae-Hoo YiParacoccus hibisci sp. nov., isolated from the rhizosphere of Hibiscus syriacus L. (Mugunghwa flower)10.1099/ijsem.0.001874IJSEM 67: 1849-1854 201728598318