Strain identifier

BacDive ID: 14048

Type strain: Yes

Species: Lewinella persica

Strain Designation: T-3

Strain history: <- NBRC <- NCIMB <- R. A. Lewin, Scripps Inst. Oceanography, Univ. California, La Jolla, USA; T-3

NCBI tax ID(s): 70998 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 16742

BacDive-ID: 14048

DSM-Number: 23188

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Lewinella persica T-3 is a mesophilic bacterium that was isolated from brown mud.

NCBI tax id

  • NCBI tax id: 70998
  • Matching level: species

strain history

  • @ref: 16742
  • history: <- NBRC <- NCIMB <- R. A. Lewin, Scripps Inst. Oceanography, Univ. California, La Jolla, USA; T-3

doi: 10.13145/bacdive14048.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Saprospiria
  • order: Saprospirales
  • family: Lewinellaceae
  • genus: Lewinella
  • species: Lewinella persica
  • full scientific name: Lewinella persica (Lewin 1970) Sly et al. 1998
  • synonyms

    @refsynonym
    20215Neolewinella persica
    20215Herpetosiphon persicus

@ref: 16742

domain: Bacteria

phylum: Bacteroidetes

class: Saprospiria

order: Sphingobacteriales

family: Lewinellaceae

genus: Lewinella

species: Lewinella persica

full scientific name: Lewinella persica (Lewin 1970) Sly et al. 1998 emend. Khan et al. 2007 emend. Hahnke et al. 2016

strain designation: T-3

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no93.591
6948099.99negative

Culture and growth conditions

culture medium

  • @ref: 16742
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

  • @ref: 16742
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no99
69480no99.958

Isolation, sampling and environmental information

isolation

  • @ref: 16742
  • sample type: brown mud
  • geographic location: Muigh Inis, Galway
  • country: Ireland
  • origin.country: IRL
  • continent: Europe

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Mud (Sludge)

taxonmaps

  • @ref: 69479
  • File name: preview.99_6279.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_489;96_2988;97_3673;98_4651;99_6279&stattab=map
  • Last taxonomy: Lewinella persica subclade
  • 16S sequence: AM295256
  • Sequence Identity:
  • Total samples: 1599
  • soil counts: 38
  • aquatic counts: 1445
  • animal counts: 105
  • plant counts: 11

Safety information

risk assessment

  • @ref: 16742
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Lewinella persicus 16S ribosomal RNA gene, partial sequenceAF0392951419ena70998
20218Lewinella persicus partial 16S rRNA gene, type strain ATCC 23167TAM2952561418ena70998
16742Lewinella persicus gene for 16S ribosomal RNA, partial sequenceAB3016161451ena70998

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Neolewinella persica DSM 23188GCA_000373105scaffoldncbi1122179
66792Lewinella persica DSM 231881122179.3wgspatric1122179
66792Lewinella persica DSM 231882515154070draftimg1122179

GC content

@refGC-contentmethod
1674252.6
1674253.0high performance liquid chromatography (HPLC)
1674251.6sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno99no
motileno91.148no
flagellatedno96.129no
gram-positiveno97.365no
anaerobicno99.403no
aerobicyes82.723no
halophileno78.262no
spore-formingno94.754no
thermophileno97.062no
glucose-utilyes86.834no
glucose-fermentno88.629no

External links

@ref: 16742

culture collection no.: DSM 23188, ATCC 23167, NBRC 102663, NCIMB 1396

straininfo link

  • @ref: 83217
  • straininfo: 37920

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18048730Lewinella agarilytica sp. nov., a novel marine bacterium of the phylum Bacteroidetes, isolated from beach sediment.Lee SDInt J Syst Evol Microbiol10.1099/ijs.0.65254-02007Bacterial Typing Techniques, Bacteroidetes/chemistry/*classification/genetics/*isolation & purification, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Geologic Sediments/*microbiology, Korea, Microscopy, Electron, Transmission, Molecular Sequence Data, Phylogeny, Pigments, Biological/metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic AcidGenetics
Phylogeny33054906Lewinella aurantiaca sp. nov., a carotenoid pigment-producing bacterium isolated from surface seawater.Kim I, Chhetri G, Kim J, Kang M, Seo TInt J Syst Evol Microbiol10.1099/ijsem.0.0045152020Bacterial Typing Techniques, Bacteroidetes/*classification/isolation & purification, Base Composition, Carotenoids/*chemistry, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16742Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23188)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23188
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
83217Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID37920.1StrainInfo: A central database for resolving microbial strain identifiers