Strain identifier
BacDive ID: 14048
Type strain:
Species: Lewinella persica
Strain Designation: T-3
Strain history: <- NBRC <- NCIMB <- R. A. Lewin, Scripps Inst. Oceanography, Univ. California, La Jolla, USA; T-3
NCBI tax ID(s): 70998 (species)
General
@ref: 16742
BacDive-ID: 14048
DSM-Number: 23188
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Lewinella persica T-3 is a mesophilic bacterium that was isolated from brown mud.
NCBI tax id
- NCBI tax id: 70998
- Matching level: species
strain history
- @ref: 16742
- history: <- NBRC <- NCIMB <- R. A. Lewin, Scripps Inst. Oceanography, Univ. California, La Jolla, USA; T-3
doi: 10.13145/bacdive14048.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Saprospiria
- order: Saprospirales
- family: Lewinellaceae
- genus: Lewinella
- species: Lewinella persica
- full scientific name: Lewinella persica (Lewin 1970) Sly et al. 1998
synonyms
@ref synonym 20215 Neolewinella persica 20215 Herpetosiphon persicus
@ref: 16742
domain: Bacteria
phylum: Bacteroidetes
class: Saprospiria
order: Sphingobacteriales
family: Lewinellaceae
genus: Lewinella
species: Lewinella persica
full scientific name: Lewinella persica (Lewin 1970) Sly et al. 1998 emend. Khan et al. 2007 emend. Hahnke et al. 2016
strain designation: T-3
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | no | 93.591 | |
69480 | 99.99 | negative |
Culture and growth conditions
culture medium
- @ref: 16742
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 16742
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 99 |
69480 | no | 99.958 |
Isolation, sampling and environmental information
isolation
- @ref: 16742
- sample type: brown mud
- geographic location: Muigh Inis, Galway
- country: Ireland
- origin.country: IRL
- continent: Europe
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Mud (Sludge)
taxonmaps
- @ref: 69479
- File name: preview.99_6279.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_489;96_2988;97_3673;98_4651;99_6279&stattab=map
- Last taxonomy: Lewinella persica subclade
- 16S sequence: AM295256
- Sequence Identity:
- Total samples: 1599
- soil counts: 38
- aquatic counts: 1445
- animal counts: 105
- plant counts: 11
Safety information
risk assessment
- @ref: 16742
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Lewinella persicus 16S ribosomal RNA gene, partial sequence | AF039295 | 1419 | ena | 70998 |
20218 | Lewinella persicus partial 16S rRNA gene, type strain ATCC 23167T | AM295256 | 1418 | ena | 70998 |
16742 | Lewinella persicus gene for 16S ribosomal RNA, partial sequence | AB301616 | 1451 | ena | 70998 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Neolewinella persica DSM 23188 | GCA_000373105 | scaffold | ncbi | 1122179 |
66792 | Lewinella persica DSM 23188 | 1122179.3 | wgs | patric | 1122179 |
66792 | Lewinella persica DSM 23188 | 2515154070 | draft | img | 1122179 |
GC content
@ref | GC-content | method |
---|---|---|
16742 | 52.6 | |
16742 | 53.0 | high performance liquid chromatography (HPLC) |
16742 | 51.6 | sequence analysis |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 99 | no |
motile | no | 91.148 | no |
flagellated | no | 96.129 | no |
gram-positive | no | 97.365 | no |
anaerobic | no | 99.403 | no |
aerobic | yes | 82.723 | no |
halophile | no | 78.262 | no |
spore-forming | no | 94.754 | no |
thermophile | no | 97.062 | no |
glucose-util | yes | 86.834 | no |
glucose-ferment | no | 88.629 | no |
External links
@ref: 16742
culture collection no.: DSM 23188, ATCC 23167, NBRC 102663, NCIMB 1396
straininfo link
- @ref: 83217
- straininfo: 37920
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 18048730 | Lewinella agarilytica sp. nov., a novel marine bacterium of the phylum Bacteroidetes, isolated from beach sediment. | Lee SD | Int J Syst Evol Microbiol | 10.1099/ijs.0.65254-0 | 2007 | Bacterial Typing Techniques, Bacteroidetes/chemistry/*classification/genetics/*isolation & purification, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genes, rRNA, Geologic Sediments/*microbiology, Korea, Microscopy, Electron, Transmission, Molecular Sequence Data, Phylogeny, Pigments, Biological/metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid | Genetics |
Phylogeny | 33054906 | Lewinella aurantiaca sp. nov., a carotenoid pigment-producing bacterium isolated from surface seawater. | Kim I, Chhetri G, Kim J, Kang M, Seo T | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004515 | 2020 | Bacterial Typing Techniques, Bacteroidetes/*classification/isolation & purification, Base Composition, Carotenoids/*chemistry, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
16742 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23188) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23188 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
83217 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID37920.1 | StrainInfo: A central database for resolving microbial strain identifiers |