Strain identifier

BacDive ID: 140473

Type strain: Yes

Species: Aquaspirillum soli

Strain Designation: THG-SQE6

Strain history: T.-H. Yi; Kyung Hee Univ., South Korea; THG-SQE6.

NCBI tax ID(s): 1591092 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 43221

BacDive-ID: 140473

keywords: 16S sequence, Bacteria, microaerophile, Gram-negative, motile, helical-shaped, colony-forming

description: Aquaspirillum soli THG-SQE6 is a microaerophile, Gram-negative, motile bacterium that forms circular colonies and was isolated from soil sample of a reed pond.

NCBI tax id

  • NCBI tax id: 1591092
  • Matching level: species

strain history

  • @ref: 67770
  • history: T.-H. Yi; Kyung Hee Univ., South Korea; THG-SQE6.

doi: 10.13145/bacdive140473.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Neisseriales
  • family: Chromobacteriaceae
  • genus: Aquaspirillum
  • species: Aquaspirillum soli
  • full scientific name: Aquaspirillum soli Moya et al. 2017

@ref: 43221

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Neisseriales

family: Chromobacteriaceae

genus: Aquaspirillum

species: Aquaspirillum soli

strain designation: THG-SQE6

type strain: yes

Morphology

cell morphology

  • @ref: 43221
  • gram stain: negative
  • cell length: 5.3-9.3 µm
  • cell width: 0.9-1.1 µm
  • cell shape: helical-shaped
  • motility: yes

colony morphology

  • @ref: 43221
  • colony size: 1.0-2.0 mm
  • colony color: opaque white
  • colony shape: circular
  • incubation period: 3-4 days
  • medium used: R2A

Culture and growth conditions

culture medium

@refnamegrowth
43221Reasoner's 2A agar (R2A)yes
43221TSA (tryptic soy agar)yes
43221nutritient agar (NA)yes
43221marine agar (MA)no

culture temp

@refgrowthtypetemperaturerange
43221positiveoptimum25-42
43221positivegrowth4-42
67770positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
43221positivegrowth6-8.5alkaliphile
43221positiveoptimum6.5-7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 43221
  • oxygen tolerance: microaerophile

halophily

  • @ref: 43221
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-1.5 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4322153424tween 20-hydrolysis
4322153426tween 80-hydrolysis
4322117895L-tyrosine-hydrolysis
43221casein-hydrolysis
4322117029chitin-hydrolysis
4322128017starch-hydrolysis
4322185146carboxymethylcellulose-hydrolysis
4322116991dna-hydrolysis
4322117632nitrate+reduction
4322117234glucose+builds acid from
432214853esculin+hydrolysis
4322125115malate+assimilation
43221506227N-acetylglucosamine+assimilation
4322117634D-glucose+assimilation
4322130849L-arabinose-assimilation
4322116899D-mannitol-assimilation
4322116024D-mannose-assimilation
4322117306maltose-assimilation
4322124265gluconate-assimilation
4322127689decanoate-assimilation
4322117128adipate-assimilation
4322153258sodium citrate-assimilation
4322118401phenylacetate-assimilation
4322117814salicin+assimilation
4322117272propionate+assimilation
4322131011valerate+assimilation
43221370543-hydroxybutyrate+assimilation
4322117203L-proline+assimilation
4322132954sodium acetate+assimilation
4322116977L-alanine+assimilation
4322117115L-serine+assimilation
4322124996lactate+assimilation
4322128053melibiose-assimilation
4322118287L-fucose-assimilation
4322117924D-sorbitol-assimilation
4322115971L-histidine-assimilation
43221168082-dehydro-D-gluconate-assimilation
43221178794-hydroxybenzoate-assimilation
4322162345L-rhamnose-assimilation
4322116988D-ribose-assimilation
4322117268myo-inositol-assimilation
4322117992sucrose-assimilation
4322117240itaconate-assimilation
432219300suberic acid-assimilation
4322162983sodium malonate-assimilation
43221581435-dehydro-D-gluconate-assimilation
4322128087glycogen-assimilation
43221161933-hydroxybenzoate-assimilation

metabolite production

  • @ref: 43221
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
43221catalase+1.11.1.6
43221cytochrome oxidase+1.9.3.1
43221alkaline phosphatase+3.1.3.1
43221esterase (C 4)+
43221esterase Lipase (C 8)+
43221leucine arylamidase+3.4.11.1
43221valine arylamidase+
43221cystine arylamidase+3.4.11.3
43221beta-glucosidase+3.2.1.21
43221acid phosphatase+3.1.3.2
43221trypsin+3.4.21.4
43221lipase (C 14)-
43221chymotrypsin-3.4.4.5
43221naphthol-AS-BI-phosphohydrolase-
43221alpha-galactosidase-3.2.1.22
43221beta-galactosidase-3.2.1.23
43221beta-glucuronidase-3.2.1.31
43221alpha-glucosidase-3.2.1.20
43221N-acetyl-beta-glucosaminidase-3.2.1.52
43221alpha-mannosidase-3.2.1.24
43221alpha-fucosidase-3.2.1.51
43221arginine dihydrolase-3.5.3.6

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    43221C10:01.2
    43221C14:01.4
    43221C16:021.3
    43221C18:05.3
    43221C18:3ω6,9,12c1.5
    43221C12:0 anteiso1.5
    43221C12:0 3OH10.8
    43221C16:1ω7c / C16:1ω6c44.7
    43221C18:1ω7c8.9
  • type of FA analysis: whole cell analysis
  • incubation medium: R2A
  • agar/liquid: liquid
  • incubation temperature: 28
  • incubation time: 2
  • system: MIS MIDI

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeenrichment cultureenrichment culture durationenrichment culture temperatureisolation procedure
43221soil sample of a reed pondShangqiu, Henan provinceChinaCHNAsia34115nutrient agar (NA, Difco)1 week28serial dilution plating method
67770Soil of a reed pond in ShangqiuHenan ProvinceChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Pond (small)
#Environmental#Terrestrial#Soil

Sequence information

16S sequences

  • @ref: 43221
  • description: Aquaspirillum sp. THG-SQE6 16S ribosomal RNA gene, partial sequence
  • accession: KM598238
  • length: 1453
  • database: nuccore
  • NCBI tax ID: 1591092

GC content

  • @ref: 67770
  • GC-content: 53.1
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 43221

culture collection no.: CCTCC AB 2016081, KACC 18846, JCM 30429

literature

  • topic: Phylogeny
  • Pubmed-ID: 28109204
  • title: Aquaspirillum soli sp. nov., isolated from a soil sample.
  • authors: Moya G, Trinh H, Yan ZF, Won KH, Yang JE, Wang QJ, Kook MC, Yi TH
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001802
  • year: 2017
  • mesh: Bacterial Typing Techniques, Base Composition, Betaproteobacteria/*classification/genetics/isolation & purification, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43221Gabriela Moya, Huan Trinh, Zheng-Fei Yan, Kyung-Hwa Won, Jung-Eun Yang, Qi-Jun Wang, Moo-Chang Kook, Tae-Hoo YiAquaspirillum soli sp. nov., isolated from a soil sample10.1099/ijsem.0.001802IJSEM 67: 1312-1317 201728109204
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/