Strain identifier

BacDive ID: 140420

Type strain: Yes

Species: Monaibacterium marinum

Strain Designation: C7

Strain history: <- T. Chernikova, Bangor Univ., Wales, U.K.; C7 <- T. Chernikova, Bangor Univ., Wales, U.K.; C7

NCBI tax ID(s): 1690039 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 43027

BacDive-ID: 140420

DSM-Number: 100241

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped, colony-forming

description: Monaibacterium marinum C7 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from seawater.

NCBI tax id

  • NCBI tax id: 1690039
  • Matching level: species

strain history

  • @ref: 43027
  • history: <- T. Chernikova, Bangor Univ., Wales, U.K.; C7 <- T. Chernikova, Bangor Univ., Wales, U.K.; C7

doi: 10.13145/bacdive140420.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Roseobacteraceae
  • genus: Monaibacterium
  • species: Monaibacterium marinum
  • full scientific name: Monaibacterium marinum Chernikova et al. 2017

@ref: 43027

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Monaibacterium

species: Monaibacterium marinum

full scientific name: Monaibacterium marinum Chernikova et al. 2017

strain designation: C7

type strain: yes

Morphology

cell morphology

  • @ref: 43505
  • gram stain: negative
  • cell length: 1.7 µm
  • cell width: 0.6 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 43505
  • colony size: 2-3 mm
  • colony color: white
  • colony shape: circular
  • incubation period: 3 days
  • medium used: ONR7a

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
43505ONR7ayes
43027BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
43505positivegrowth4-31
43505positiveoptimum20psychrophilic
43027positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
43505positivegrowth5.5-9alkaliphile
43505positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 43505
  • oxygen tolerance: aerobe

spore formation

  • @ref: 43505
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
43505NaClpositivegrowth0-9 %
43505NaClpositiveoptimum2-7 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4350516024D-mannose-assimilation
4350530849L-arabinose-assimilation
435055291gelatin-hydrolysis
4350553426tween 80-hydrolysis
4350517632nitrate-reduction
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea+hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistantresistance conc.
4350528971ampicillinyesyes25000 µg (disc)
4350517076streptomycinyesyes25000 µg (disc)
4350548923erythromycinyesyes5000 µg (disc)
4350517833gentamicinyesyes30000 µg (disc)
4350528077rifampicinyesyes30000 µg (disc)
435059215spectinomycinyesyes25000 µg (disc)
4350517698chloramphenicolyesyes30000 µg (disc)
435057809oxacillinyesyes5000 µg (disc)
4350528368novobiocinyesyes30000 µg (disc)
435056104kanamycinyesyes30000 µg (disc)
4350527902tetracyclineyesyes10000 µg (disc)
43505100147nalidixic acidyesyes30000 µg (disc)
435057507neomycinyesyes30000 µg (disc)
4350528001vancomycinyesyes30000 µg (disc)
4350545924trimethoprimyesyes2500 µg (disc)

metabolite production

@refChebi-IDmetaboliteproduction
4350516136hydrogen sulfideno
4350535581indoleno
6836935581indoleno

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
43505catalase+1.11.1.6
43505cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease+3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
43027----+--+------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
43027seawaterNorth Wales, Menai Straits, St. George’s Pier (53° 13' 31.3'' N; 4° 09' 33.3'' W)United KingdomGBREurope53.22544.1593
43505seawater collected from Menai Straits (St. George's Pier), Menai BridgeWalesUnited KingdomGBREurope53.225-4.159

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_112652.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_27652;97_49425;98_76350;99_112652&stattab=map
  • Last taxonomy: Monaibacterium marinum subclade
  • 16S sequence: KP797887
  • Sequence Identity:
  • Total samples: 24
  • aquatic counts: 23
  • animal counts: 1

Safety information

risk assessment

  • @ref: 43027
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 43027
  • description: Monaibacterium marinum strain C7 16S ribosomal RNA gene, partial sequence
  • accession: KP797887
  • length: 1416
  • database: ena
  • NCBI tax ID: 1690039

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Monaibacterium marinum C7GCA_900231835contigncbi1690039
66792Monaibacterium marinum C72710264757draftimg1690039

GC content

@refGC-contentmethod
4350560high performance liquid chromatography (HPLC)
4302760.0high performance liquid chromatography (HPLC)

External links

@ref: 43027

culture collection no.: DSM 100241, LMG 28800

straininfo link

  • @ref: 96694
  • straininfo: 404700

literature

  • topic: Phylogeny
  • Pubmed-ID: 28840796
  • title: Monaibacterium marinum, gen. nov, sp. nov, a new member of the Alphaproteobacteria isolated from seawater of Menai Straits, Wales, UK.
  • authors: Chernikova TN, Dallimore J, Lunsdorf H, Heipieper HJ, Golyshin PN
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.002111
  • year: 2017
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/genetics/isolation & purification, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry, Wales
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
43027Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100241Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100241)
43505Tatyana N. Chernikova, James Dallimore, Heinrich Lünsdorf, Hermann J. Heipieper, Peter N. GolyshinMonaibacterium marinum, gen. nov, sp. nov, a new member of the Alphaproteobacteria isolated from seawater of Menai Straits, Wales, UK10.1099/ijsem.0.002111IJSEM 67: 3310-3317 201728840796
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
68369Automatically annotated from API 20NE
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
96694Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID404700.1