Strain identifier
BacDive ID: 140420
Type strain:
Species: Monaibacterium marinum
Strain Designation: C7
Strain history: <- T. Chernikova, Bangor Univ., Wales, U.K.; C7 <- T. Chernikova, Bangor Univ., Wales, U.K.; C7
NCBI tax ID(s): 1690039 (species)
General
@ref: 43027
BacDive-ID: 140420
DSM-Number: 100241
keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped, colony-forming
description: Monaibacterium marinum C7 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from seawater.
NCBI tax id
- NCBI tax id: 1690039
- Matching level: species
strain history
- @ref: 43027
- history: <- T. Chernikova, Bangor Univ., Wales, U.K.; C7 <- T. Chernikova, Bangor Univ., Wales, U.K.; C7
doi: 10.13145/bacdive140420.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Roseobacteraceae
- genus: Monaibacterium
- species: Monaibacterium marinum
- full scientific name: Monaibacterium marinum Chernikova et al. 2017
@ref: 43027
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Monaibacterium
species: Monaibacterium marinum
full scientific name: Monaibacterium marinum Chernikova et al. 2017
strain designation: C7
type strain: yes
Morphology
cell morphology
- @ref: 43505
- gram stain: negative
- cell length: 1.7 µm
- cell width: 0.6 µm
- cell shape: rod-shaped
- motility: no
colony morphology
- @ref: 43505
- colony size: 2-3 mm
- colony color: white
- colony shape: circular
- incubation period: 3 days
- medium used: ONR7a
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
43505 | ONR7a | yes | ||
43027 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | yes | https://mediadive.dsmz.de/medium/514 | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
43505 | positive | growth | 4-31 | |
43505 | positive | optimum | 20 | psychrophilic |
43027 | positive | growth | 30 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
43505 | positive | growth | 5.5-9 | alkaliphile |
43505 | positive | optimum | 7.5 |
Physiology and metabolism
oxygen tolerance
- @ref: 43505
- oxygen tolerance: aerobe
spore formation
- @ref: 43505
- spore formation: no
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
43505 | NaCl | positive | growth | 0-9 % |
43505 | NaCl | positive | optimum | 2-7 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
43505 | 16024 | D-mannose | - | assimilation |
43505 | 30849 | L-arabinose | - | assimilation |
43505 | 5291 | gelatin | - | hydrolysis |
43505 | 53426 | tween 80 | - | hydrolysis |
43505 | 17632 | nitrate | - | reduction |
68369 | 25115 | malate | - | assimilation |
68369 | 17128 | adipate | - | assimilation |
68369 | 27689 | decanoate | - | assimilation |
68369 | 24265 | gluconate | - | assimilation |
68369 | 17306 | maltose | - | assimilation |
68369 | 59640 | N-acetylglucosamine | - | assimilation |
68369 | 16899 | D-mannitol | - | assimilation |
68369 | 16024 | D-mannose | - | assimilation |
68369 | 30849 | L-arabinose | - | assimilation |
68369 | 17634 | D-glucose | - | assimilation |
68369 | 5291 | gelatin | - | hydrolysis |
68369 | 4853 | esculin | - | hydrolysis |
68369 | 16199 | urea | + | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 17634 | D-glucose | - | fermentation |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | - | reduction |
antibiotic resistance
@ref | ChEBI | metabolite | is antibiotic | is sensitive | sensitivity conc. | is resistant | resistance conc. |
---|---|---|---|---|---|---|---|
43505 | 28971 | ampicillin | yes | yes | 25000 µg (disc) | ||
43505 | 17076 | streptomycin | yes | yes | 25000 µg (disc) | ||
43505 | 48923 | erythromycin | yes | yes | 5000 µg (disc) | ||
43505 | 17833 | gentamicin | yes | yes | 30000 µg (disc) | ||
43505 | 28077 | rifampicin | yes | yes | 30000 µg (disc) | ||
43505 | 9215 | spectinomycin | yes | yes | 25000 µg (disc) | ||
43505 | 17698 | chloramphenicol | yes | yes | 30000 µg (disc) | ||
43505 | 7809 | oxacillin | yes | yes | 5000 µg (disc) | ||
43505 | 28368 | novobiocin | yes | yes | 30000 µg (disc) | ||
43505 | 6104 | kanamycin | yes | yes | 30000 µg (disc) | ||
43505 | 27902 | tetracycline | yes | yes | 10000 µg (disc) | ||
43505 | 100147 | nalidixic acid | yes | yes | 30000 µg (disc) | ||
43505 | 7507 | neomycin | yes | yes | 30000 µg (disc) | ||
43505 | 28001 | vancomycin | yes | yes | 30000 µg (disc) | ||
43505 | 45924 | trimethoprim | yes | yes | 2500 µg (disc) |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
43505 | 16136 | hydrogen sulfide | no |
43505 | 35581 | indole | no |
68369 | 35581 | indole | no |
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
43505 | catalase | + | 1.11.1.6 |
43505 | cytochrome oxidase | + | 1.9.3.1 |
68369 | gelatinase | - | |
68369 | beta-glucosidase | - | 3.2.1.21 |
68369 | urease | + | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
43027 | - | - | - | - | + | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
---|---|---|---|---|---|---|---|
43027 | seawater | North Wales, Menai Straits, St. George’s Pier (53° 13' 31.3'' N; 4° 09' 33.3'' W) | United Kingdom | GBR | Europe | 53.2254 | 4.1593 |
43505 | seawater collected from Menai Straits (St. George's Pier), Menai Bridge | Wales | United Kingdom | GBR | Europe | 53.225 | -4.159 |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
taxonmaps
- @ref: 69479
- File name: preview.99_112652.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_27652;97_49425;98_76350;99_112652&stattab=map
- Last taxonomy: Monaibacterium marinum subclade
- 16S sequence: KP797887
- Sequence Identity:
- Total samples: 24
- aquatic counts: 23
- animal counts: 1
Safety information
risk assessment
- @ref: 43027
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 43027
- description: Monaibacterium marinum strain C7 16S ribosomal RNA gene, partial sequence
- accession: KP797887
- length: 1416
- database: ena
- NCBI tax ID: 1690039
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Monaibacterium marinum C7 | GCA_900231835 | contig | ncbi | 1690039 |
66792 | Monaibacterium marinum C7 | 2710264757 | draft | img | 1690039 |
GC content
@ref | GC-content | method |
---|---|---|
43505 | 60 | high performance liquid chromatography (HPLC) |
43027 | 60.0 | high performance liquid chromatography (HPLC) |
External links
@ref: 43027
culture collection no.: DSM 100241, LMG 28800
straininfo link
- @ref: 96694
- straininfo: 404700
literature
- topic: Phylogeny
- Pubmed-ID: 28840796
- title: Monaibacterium marinum, gen. nov, sp. nov, a new member of the Alphaproteobacteria isolated from seawater of Menai Straits, Wales, UK.
- authors: Chernikova TN, Dallimore J, Lunsdorf H, Heipieper HJ, Golyshin PN
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.002111
- year: 2017
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/genetics/isolation & purification, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry, Wales
- topic2: Transcriptome
Reference
@id | authors | title | doi/url | catalogue | journal | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
43027 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100241 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100241) | |||
43505 | Tatyana N. Chernikova, James Dallimore, Heinrich Lünsdorf, Hermann J. Heipieper, Peter N. Golyshin | Monaibacterium marinum, gen. nov, sp. nov, a new member of the Alphaproteobacteria isolated from seawater of Menai Straits, Wales, UK | 10.1099/ijsem.0.002111 | IJSEM 67: 3310-3317 2017 | 28840796 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
68369 | Automatically annotated from API 20NE | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
96694 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404700.1 |