Strain identifier
BacDive ID: 140390
Type strain: 
Species: Arenibacter algicola
Strain Designation: TG 409
Strain history: <- D. H. Green, Scottish Association for Marine Science, Oban, United Kingdom; TG 409 <- T. Gutierrez
NCBI tax ID(s): 616991 (species)
General
@ref: 42997
BacDive-ID: 140390
DSM-Number: 24761
keywords: 16S sequence, Bacteria, mesophilic
description: Arenibacter algicola TG 409 is a mesophilic bacterium that was isolated from marine algal culture of Skeletonema costatum.
NCBI tax id
- NCBI tax id: 616991
- Matching level: species
strain history
- @ref: 42997
- history: <- D. H. Green, Scottish Association for Marine Science, Oban, United Kingdom; TG 409 <- T. Gutierrez
doi: 10.13145/bacdive140390.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Arenibacter
- species: Arenibacter algicola
- full scientific name: Arenibacter algicola Gutierrez et al. 2021
@ref: 42997
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Arenibacter
species: Arenibacter algicola
full scientific name: Arenibacter algicola Gutierrez et al. 2014
strain designation: TG 409
type strain: yes
Culture and growth conditions
culture medium
- @ref: 42997
- name: BACTO MARINE BROTH WITH NA-ACETATE (DSMZ Medium 1354)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1354
- composition: Name: BACTO MARINE BROTH WITH NA-ACETATE (DSMZ Medium 1354) Composition: NaCl 19.45 g/l Agar 15.0 g/l Na acetate 10.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 42997
- growth: positive
- type: growth
- temperature: 28
Isolation, sampling and environmental information
isolation
- @ref: 42997
- sample type: marine algal culture of Skeletonema costatum
- host species: Skeletonema costatum
- geographic location: North Sea
- country: United Kingdom
- origin.country: GBR
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Host | #Algae |
taxonmaps
- @ref: 69479
- File name: preview.99_2346.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_102;96_1267;97_1502;98_1829;99_2346&stattab=map
- Last taxonomy: Arenibacter
- 16S sequence: FJ176555
- Sequence Identity:
- Total samples: 9391
- soil counts: 1235
- aquatic counts: 7063
- animal counts: 925
- plant counts: 168
Sequence information
16S sequences
- @ref: 42997
- description: Arenibacter algicola strain TG409 16S ribosomal RNA gene, partial sequence
- accession: FJ176555
- length: 1062
- database: nuccore
- NCBI tax ID: 616991
GC content
- @ref: 42997
- GC-content: 41.9
- method: high performance liquid chromatography (HPLC)
External links
@ref: 42997
culture collection no.: DSM 24761
straininfo link
- @ref: 96678
- straininfo: 402378
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 42997 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24761 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24761) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 96678 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402378.1 |