Strain identifier
BacDive ID: 140389
Type strain: 
Species: Heliorestis acidaminivorans
Strain Designation: NCMAB119, HR10B
Strain history: <- M. Madigan, Dept. Microbiology, Southern Illinois Univ., Carbondale, USA; HR10B <- M. Asao
NCBI tax ID(s): 553427 (species)
version 8.1 (current version)
General
@ref: 42996
BacDive-ID: 140389
DSM-Number: 24790
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, motile
description: Heliorestis acidaminivorans NCMAB119 is an anaerobe, mesophilic, motile bacterium that was isolated from sediments.
NCBI tax id
- NCBI tax id: 553427
- Matching level: species
strain history
- @ref: 42996
- history: <- M. Madigan, Dept. Microbiology, Southern Illinois Univ., Carbondale, USA; HR10B <- M. Asao
doi: 10.13145/bacdive140389.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Heliobacteriaceae
- genus: Heliorestis
- species: Heliorestis acidaminivorans
- full scientific name: Heliorestis acidaminivorans Asao et al. 2021
@ref: 42996
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Heliobacteriaceae
genus: Heliorestis
species: Heliorestis acidaminivorans
full scientific name: Heliorestis acidaminivorans Asao et al. 2012
strain designation: NCMAB119, HR10B
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 94.408 | |
| 69480 | 99.339 | positive |
Culture and growth conditions
culture medium
- @ref: 42996
- name: 1/2 S° HELIORESTIS MEDIUM (DSMZ Medium 1381)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1381
- composition: Name: ½ S° HELIORESTIS MEDIUM (DSMZ Medium 1381) Composition: Na2CO3 2.5 g/l NaHCO3 2.5 g/l Bicine 1.63 g/l Na-acetate 1.0 g/l Na-pyruvate 1.0 g/l KH2PO4 0.5 g/l NH4Cl 0.5 g/l Na2S2O3 x 5 H2O 0.5 g/l Na2S x 9 H2O 0.5 g/l MgSO4 x 7 H2O 0.2 g/l Yeast extract 0.1 g/l CaCl2 0.075 g/l EDTA 0.0052 g/l FeCl2 x 4 H2O 0.0015 g/l CoCl2 x 6 H2O 0.00019 g/l Na2MoO4 x 2 H2O 0.000188 g/l MnCl2 x 4 H2O 0.0001 g/l ZnCl2 7e-05 g/l VOSO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2.5e-05 g/l Vitamin B12 2e-05 g/l CuCl2 x 2 H2O 1.7e-05 g/l H3BO3 6e-06 g/l NaHSeO3 2e-06 g/l Na2WO4 x 2 H2O 2e-06 g/l Distilled water
culture temp
- @ref: 42996
- growth: positive
- type: growth
- temperature: 33
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: anaerobe
- confidence: 99.392
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 42996
- sample type: sediments
- geographic location: Northwest of Cairo, Wadi El Natrun, Lake Hamra
- country: Egypt
- origin.country: EGY
- continent: Africa
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Sediment
Sequence information
16S sequences
- @ref: 42996
- description: Heliorestis acidaminivorans strain HR10B 16S ribosomal RNA gene, partial sequence
- accession: EU908049
- length: 1559
- database: ena
- NCBI tax ID: 553427
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Heliorestis acidaminivorans DSM 24790 | GCA_008933955 | contig | ncbi | 553427 |
| 66792 | Heliorestis acidaminivorans strain DSM 24790 | 553427.4 | wgs | patric | 553427 |
| 66792 | Heliorestis acidaminivorans DSM 24790 | 2914073641 | draft | img | 553427 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| gram-positive | no | 82.517 | no |
| anaerobic | yes | 99.126 | no |
| halophile | no | 92.524 | no |
| spore-forming | yes | 94.256 | no |
| glucose-util | yes | 72.359 | no |
| thermophile | no | 92.48 | yes |
| aerobic | no | 97.606 | no |
| motile | yes | 77.665 | no |
| flagellated | no | 86.653 | no |
| glucose-ferment | no | 85.818 | no |
External links
@ref: 42996
culture collection no.: DSM 24790, ATCC BAA 2399
straininfo link
- @ref: 96677
- straininfo: 404467
literature
- topic: Metabolism
- Pubmed-ID: 22588563
- title: Amino acid-assimilating phototrophic heliobacteria from soda lake environments: Heliorestis acidaminivorans sp. nov. and 'Candidatus Heliomonas lunata'.
- authors: Asao M, Takaichi S, Madigan MT
- journal: Extremophiles
- DOI: 10.1007/s00792-012-0458-8
- year: 2012
- mesh: Bacterial Proteins/genetics/metabolism, Bacteriochlorophylls/genetics/metabolism, Egypt, *Gram-Positive Endospore-Forming Rods/classification/cytology/genetics/metabolism, Lakes/*microbiology, RNA, Bacterial/genetics/metabolism, RNA, Ribosomal, 16S/genetics/metabolism, *Water Microbiology
- topic2: Phylogeny
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 42996 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24790 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24790) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 96677 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404467.1 |