Strain identifier
BacDive ID: 14038
Type strain:
Species: Sanguibacter keddieii
Strain Designation: ST-74
Strain history: CIP <- 1999, CECT <- J.F. Fernandez-Garayzabal: strain ST-74
NCBI tax ID(s): 446469 (strain), 60920 (species)
General
@ref: 3971
BacDive-ID: 14038
DSM-Number: 10542
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, animal pathogen
description: Sanguibacter keddieii ST-74 is an aerobe, mesophilic, Gram-positive animal pathogen that was isolated from bovine blood.
NCBI tax id
NCBI tax id | Matching level |
---|---|
60920 | species |
446469 | strain |
strain history
@ref | history |
---|---|
3971 | <- NCFB <- J.F. Fernández-Garayzábal, ST-74 |
67770 | IFO 16158 <-- NCIMB 703025 <-- J. F. Fernández-Garayzábal ST-74. |
120395 | CIP <- 1999, CECT <- J.F. Fernandez-Garayzabal: strain ST-74 |
doi: 10.13145/bacdive14038.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Jonesiaceae
- genus: Sanguibacter
- species: Sanguibacter keddieii
- full scientific name: Sanguibacter keddieii Fernández-Garayzábal et al. 1995
@ref: 3971
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Jonesiaceae
genus: Sanguibacter
species: Sanguibacter keddieii
full scientific name: Sanguibacter keddieii Fernández-Garayzábal et al. 1995 emend. Pikuta et al. 2017 emend. Nouioui et al. 2018
strain designation: ST-74
type strain: yes
Morphology
cell morphology
@ref | gram stain | confidence | cell shape | motility |
---|---|---|---|---|
69480 | positive | 100 | ||
120395 | positive | rod-shaped | yes |
colony morphology
@ref | colony color | incubation period | medium used |
---|---|---|---|
18429 | Ivory (1014) | 10-14 days | ISP 2 |
18429 | Zinc yellow (1018) | 10-14 days | ISP 3 |
18429 | Zinc yellow (1018) | 10-14 days | ISP 4 |
18429 | Ivory (1014) | 10-14 days | ISP 5 |
18429 | Zinc yellow (1018) | 10-14 days | ISP 6 |
18429 | Ivory (1014) | 10-14 days | ISP 7 |
120395 |
multicellular morphology
@ref | forms multicellular complex | medium name |
---|---|---|
18429 | no | ISP 2 |
18429 | no | ISP 3 |
18429 | no | ISP 4 |
18429 | no | ISP 5 |
18429 | no | ISP 6 |
18429 | no | ISP 7 |
multimedia
- @ref: 66793
- multimedia content: EM_DSM_10542_1.jpg
- caption: electron microscopic image
- intellectual property rights: © HZI/Manfred Rohde
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
3971 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://mediadive.dsmz.de/medium/92 | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water |
18429 | ISP 2 | yes | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |
18429 | ISP 3 | yes | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |
18429 | ISP 4 | yes | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |
18429 | ISP 5 | yes | Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes | |
18429 | ISP 6 | yes | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |
18429 | ISP 7 | yes | Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes | |
35134 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
120395 | CIP Medium 338 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=338 | |
120395 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 | |
120395 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
3971 | positive | growth | 30 | mesophilic |
18429 | positive | optimum | 28 | |
35134 | positive | growth | 30 | |
53328 | positive | growth | 30 | |
67770 | positive | growth | 28 | mesophilic |
120395 | positive | growth | 10-30 | |
120395 | no | growth | 37 | mesophilic |
120395 | no | growth | 41 | thermophilic |
120395 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
53328 | aerobe |
120395 | facultative anaerobe |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.994 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
18429 | NaCl | positive | maximum | 7.5 % |
120395 | NaCl | positive | growth | 0-6 % |
120395 | NaCl | no | growth | 8 % |
120395 | NaCl | no | growth | 10 % |
murein
- @ref: 3971
- murein short key: A11.48
- type: A4alpha L-Lys-L-Ser-D-Glu
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
18429 | 62968 | cellulose | + | |
18429 | 16634 | raffinose | + | |
18429 | 26546 | rhamnose | + | |
18429 | 28757 | fructose | + | |
18429 | 29864 | mannitol | + | |
18429 | 17268 | myo-inositol | + | |
18429 | 18222 | xylose | + | |
18429 | 17992 | sucrose | + | |
18429 | 22599 | arabinose | + | |
18429 | 17234 | glucose | + | |
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | 24265 | gluconate | - | builds acid from |
68371 | 18403 | L-arabitol | - | builds acid from |
68371 | 18333 | D-arabitol | - | builds acid from |
68371 | 18287 | L-fucose | - | builds acid from |
68371 | 28847 | D-fucose | - | builds acid from |
68371 | 16443 | D-tagatose | - | builds acid from |
68371 | 62318 | D-lyxose | + | builds acid from |
68371 | 32528 | turanose | + | builds acid from |
68371 | 28066 | gentiobiose | + | builds acid from |
68371 | 17151 | xylitol | - | builds acid from |
68371 | 28087 | glycogen | + | builds acid from |
68371 | 28017 | starch | + | builds acid from |
68371 | 16634 | raffinose | + | builds acid from |
68371 | 6731 | melezitose | - | builds acid from |
68371 | 15443 | inulin | - | builds acid from |
68371 | 27082 | trehalose | + | builds acid from |
68371 | 17992 | sucrose | + | builds acid from |
68371 | 28053 | melibiose | + | builds acid from |
68371 | 17716 | lactose | + | builds acid from |
68371 | 17306 | maltose | + | builds acid from |
68371 | 17057 | cellobiose | + | builds acid from |
68371 | 17814 | salicin | + | builds acid from |
68371 | 4853 | esculin | + | builds acid from |
68371 | 18305 | arbutin | + | builds acid from |
68371 | 27613 | amygdalin | + | builds acid from |
68371 | 59640 | N-acetylglucosamine | + | builds acid from |
68371 | 320061 | methyl alpha-D-glucopyranoside | + | builds acid from |
68371 | 43943 | methyl alpha-D-mannoside | - | builds acid from |
68371 | 17924 | D-sorbitol | - | builds acid from |
68371 | 16899 | D-mannitol | - | builds acid from |
68371 | 17268 | myo-inositol | - | builds acid from |
68371 | 16813 | galactitol | - | builds acid from |
68371 | 62345 | L-rhamnose | + | builds acid from |
68371 | 17266 | L-sorbose | - | builds acid from |
68371 | 16024 | D-mannose | + | builds acid from |
68371 | 15824 | D-fructose | + | builds acid from |
68371 | 17634 | D-glucose | + | builds acid from |
68371 | 12936 | D-galactose | + | builds acid from |
68371 | 74863 | methyl beta-D-xylopyranoside | + | builds acid from |
68371 | 15963 | ribitol | - | builds acid from |
68371 | 65328 | L-xylose | - | builds acid from |
68371 | 65327 | D-xylose | + | builds acid from |
68371 | 16988 | D-ribose | + | builds acid from |
68371 | 30849 | L-arabinose | + | builds acid from |
68371 | 17108 | D-arabinose | - | builds acid from |
68371 | 17113 | erythritol | - | builds acid from |
68371 | 17754 | glycerol | + | builds acid from |
68368 | 5291 | gelatin | - | hydrolysis |
68368 | 27897 | tryptophan | - | energy source |
68368 | 16199 | urea | + | hydrolysis |
68368 | 16947 | citrate | + | assimilation |
68368 | 18257 | ornithine | - | degradation |
68368 | 25094 | lysine | - | degradation |
68368 | 29016 | arginine | - | hydrolysis |
120395 | 16947 | citrate | - | carbon source |
120395 | 4853 | esculin | + | hydrolysis |
120395 | 606565 | hippurate | - | hydrolysis |
120395 | 17632 | nitrate | - | reduction |
120395 | 16301 | nitrite | - | reduction |
68379 | 17632 | nitrate | + | reduction |
68379 | 4853 | esculin | + | hydrolysis |
68379 | 16199 | urea | + | hydrolysis |
68379 | 5291 | gelatin | - | hydrolysis |
68379 | 17634 | D-glucose | + | fermentation |
68379 | 16988 | D-ribose | + | fermentation |
68379 | 65327 | D-xylose | + | fermentation |
68379 | 16899 | D-mannitol | + | fermentation |
68379 | 17306 | maltose | + | fermentation |
68379 | 17716 | lactose | + | fermentation |
68379 | 17992 | sucrose | + | fermentation |
68379 | 28087 | glycogen | + | fermentation |
antibiotic resistance
- @ref: 120395
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: yes
- is resistant: no
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68368 | 15688 | acetoin | yes |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | no |
120395 | 35581 | indole | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test | methylred-test |
---|---|---|---|---|---|
68368 | 15688 | acetoin | + | ||
68368 | 35581 | indole | - | ||
120395 | 15688 | acetoin | - | ||
120395 | 17234 | glucose | + |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68379 | gelatinase | - | |
68379 | urease | + | 3.5.1.5 |
68379 | beta-glucosidase | + | 3.2.1.21 |
68379 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68379 | alpha-glucosidase | + | 3.2.1.20 |
68379 | beta-galactosidase | + | 3.2.1.23 |
68379 | alkaline phosphatase | + | 3.1.3.1 |
68379 | pyrrolidonyl arylamidase | + | 3.4.19.3 |
68379 | pyrazinamidase | - | 3.5.1.B15 |
68368 | gelatinase | - | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | + | 3.5.1.5 |
68368 | ornithine decarboxylase | - | 4.1.1.17 |
68368 | lysine decarboxylase | - | 4.1.1.18 |
68368 | arginine dihydrolase | - | 3.5.3.6 |
68368 | beta-galactosidase | - | 3.2.1.23 |
120395 | oxidase | - | |
120395 | beta-galactosidase | + | 3.2.1.23 |
120395 | alcohol dehydrogenase | - | 1.1.1.1 |
120395 | gelatinase | +/- | |
120395 | amylase | + | |
120395 | DNase | + | |
120395 | caseinase | + | 3.4.21.50 |
120395 | catalase | + | 1.11.1.6 |
120395 | tween esterase | - | |
120395 | gamma-glutamyltransferase | - | 2.3.2.2 |
120395 | lecithinase | - | |
120395 | lipase | - | |
120395 | lysine decarboxylase | - | 4.1.1.18 |
120395 | ornithine decarboxylase | - | 4.1.1.17 |
120395 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
120395 | protease | - | |
120395 | tryptophan deaminase | - | |
120395 | urease | - | 3.5.1.5 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | + | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | + | 3.2.1.22 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | alpha-mannosidase | + | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 53328 C13:0 0.3 13 53328 C14:0 4.3 14 53328 C15:0 5.5 15 53328 C16:0 7.7 16 53328 C17:0 0.8 17 53328 C13:0 ANTEISO 0.8 12.701 53328 C14:0 ISO 1 13.618 53328 C15:0 ANTEISO 57 14.711 53328 C15:0 ISO 2.6 14.621 53328 C15:1 ANTEISO A 9.2 14.526 53328 C16:0 iso 3.3 15.626 53328 C16:1 ω7c 0.4 15.819 53328 C17:0 anteiso 3.5 16.722 53328 C17:1 ISO I/C16:0 DMA 1.3 16.481 53328 C18:2 ω6,9c/C18:0 ANTE 1.4 17.724 53328 Unidentified 0.4 16.107 53328 Unidentified 0.6 17.194 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API coryne
@ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | GLU | RIB | XYL | MAN | MAL | LAC | SAC | GLYG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
18429 | + | - | + | + | +/- | + | + | + | + | + | - | + | + | + | + | + | + | + | + |
API zym
@ref | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase | Control |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
18429 | + | + | + | - | + | - | - | - | + | + | + | + | + | - | + | + | + | + | - | |
120395 | - | + | + | - | + | + | - | - | + | + | + | + | + | - | + | + | + | + | - | - |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL |
---|---|---|---|---|---|---|---|---|---|---|---|
18429 | - | - | - | - | + | - | + | - | - | + | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
120395 | + | - | - | + | + | + | - | - | + | + | + | + | + | - | + | - | - | - | - | - | + | + | + | + | + | + | + | + | + | + | + | + | - | - | + | + | + | - | + | + | + | - | - | - | - | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
120395 | + | + | + | + | + | - | + | + | - | + | + | + | + | + | - | + | + | + | + | + | + | + | + | - | - | - | - | - | - | - | - | + | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent |
---|---|---|---|---|
3971 | bovine blood | Spain | ESP | Europe |
53328 | Bovine blood | |||
67770 | Venous blood from healthy cow | |||
120395 | Animal, Bovine, blood | Spain | ESP | Europe |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Mammals | #Bovinae (Cow, Cattle) |
#Host Body Product | #Fluids | #Blood |
taxonmaps
- @ref: 69479
- File name: preview.99_6615.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_3136;97_3840;98_4877;99_6615&stattab=map
- Last taxonomy: Sanguibacter
- 16S sequence: X79450
- Sequence Identity:
- Total samples: 28524
- soil counts: 6877
- aquatic counts: 4433
- animal counts: 13080
- plant counts: 4134
Safety information
risk assessment
@ref | pathogenicity animal | biosafety level | biosafety level comment |
---|---|---|---|
3971 | yes, in single cases | 1 | Risk group (German classification) |
18429 | 2 | German classification | |
120395 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 3971
- description: Sanguibacter keddieii ST74 16S rDNA
- accession: X79450
- length: 1495
- database: ena
- NCBI tax ID: 446469
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Sanguibacter keddieii DSM 10542 | GCA_000024925 | complete | ncbi | 446469 |
66792 | Sanguibacter keddieii DSM 10542 | 446469.6 | complete | patric | 446469 |
66792 | Sanguibacter keddieii ST-74, DSM 10542 | 646564565 | complete | img | 446469 |
GC content
@ref | GC-content | method |
---|---|---|
3971 | 70.0 | thermal denaturation, midpoint method (Tm) |
67770 | 70 | thermal denaturation, midpoint method (Tm) |
67770 | 71.89 | genome sequence analysis |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | yes | 78.085 | no |
flagellated | no | 87.761 | no |
gram-positive | yes | 90.498 | no |
anaerobic | no | 98.669 | yes |
aerobic | yes | 87.597 | yes |
halophile | no | 88.113 | no |
spore-forming | no | 76.871 | no |
glucose-util | yes | 88.808 | yes |
thermophile | no | 99.73 | yes |
glucose-ferment | no | 52.681 | yes |
External links
@ref: 3971
culture collection no.: DSM 10542, ATCC 51767, CECT 4540, NCFB 3025, CCUG 36690, JCM 11429, CGMCC 1.3608, CIP 106323, IFO 16158, NBRC 16158, NCIMB 703025
straininfo link
@ref | straininfo |
---|---|
83205 | 45316 |
83206 | 312112 |
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 18319451 | Sanguibacter soli sp. nov., isolated from soil of a ginseng field. | Kim MK, Pulla RK, Kim SY, Yi TH, Soung NK, Yang DC | Int J Syst Evol Microbiol | 10.1099/ijs.0.65399-0 | 2008 | Actinomycetales/classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Korea, Molecular Sequence Data, Panax/*growth & development, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Species Specificity | Genetics |
Genetics | 21304646 | Complete genome sequence of Sanguibacter keddieii type strain (ST-74). | Ivanova N, Sikorski J, Sims D, Brettin T, Detter JC, Han C, Lapidus A, Copeland A, Glavina Del Rio T, Nolan M, Chen F, Lucas S, Tice H, Cheng JF, Bruce D, Goodwin L, Pitluck S, Pati A, Mavromatis K, Chen A, Palaniappan K, D'haeseleer P, Chain P, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Goker M, Pukall R, Klenk HP, Kyrpides NC | Stand Genomic Sci | 10.4056/sigs.16197 | 2009 |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
3971 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10542) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-10542 | |||
18429 | Wink, J. | http://www.dsmz.de/microorganisms/wink_pdf/DSM10542.pdf | Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
35134 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/18441 | ||||
53328 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 36690) | https://www.ccug.se/strain?id=36690 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66793 | Mukherjee et al. | 10.1038/nbt.3886 | GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life | 35: 676-683 2017 | 28604660 | |
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68368 | Automatically annotated from API 20E | |||||
68371 | Automatically annotated from API 50CH acid | |||||
68379 | Automatically annotated from API Coryne | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
83205 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID45316.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
83206 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID312112.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
120395 | Curators of the CIP | Collection of Institut Pasteur (CIP 106323) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106323 |