Strain identifier

BacDive ID: 140330

Type strain: Yes

Species: Weeksella massiliensis

Strain Designation: FF8

Strain history: <- C. I. Lo, URMITE, Univ. Méditerranée, Marseille, France; FF8

NCBI tax ID(s): 1461577 (species)

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General

@ref: 42937

BacDive-ID: 140330

DSM-Number: 28259

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, human pathogen

description: Weeksella massiliensis FF8 is a mesophilic human pathogen that was isolated from urine of a 65-year-old man with acute cystitis.

NCBI tax id

  • NCBI tax id: 1461577
  • Matching level: species

strain history

  • @ref: 42937
  • history: <- C. I. Lo, URMITE, Univ. Méditerranée, Marseille, France; FF8

doi: 10.13145/bacdive140330.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Weeksella
  • species: Weeksella massiliensis
  • full scientific name: Weeksella massiliensis Sankar et al. 2017

@ref: 42937

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Weeksellaceae

genus: Weeksella

species: Weeksella massiliensis

full scientific name: Weeksella massiliensis Sankar et al. 2017

strain designation: FF8

type strain: yes

Morphology

multimedia

  • @ref: 42937
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_28259.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
42937TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
42937COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

  • @ref: 42937
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 42937
  • sample type: urine of a 65-year-old man with acute cystitis
  • geographic location: Dakar
  • country: Senegal
  • origin.country: SEN
  • continent: Africa

isolation source categories

  • Cat1: #Host Body Product
  • Cat2: #Fluids
  • Cat3: #Urine

taxonmaps

  • @ref: 69479
  • File name: preview.99_8233.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_468;96_2936;97_3611;98_5994;99_8233&stattab=map
  • Last taxonomy: Weeksella massiliensis subclade
  • 16S sequence: HG931340
  • Sequence Identity:
  • Total samples: 1197
  • soil counts: 161
  • aquatic counts: 188
  • animal counts: 825
  • plant counts: 23

Safety information

risk assessment

  • @ref: 42937
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 42937
  • description: Weeksella sp. FF8 partial 16S rRNA gene, isolate FF8
  • accession: HG931340
  • length: 1483
  • database: ena
  • NCBI tax ID: 1461577

Genome sequences

  • @ref: 66792
  • description: Weeksella massiliensis FF8
  • accession: 2617271200
  • assembly level: draft
  • database: img
  • NCBI tax ID: 1461577

GC content

  • @ref: 42937
  • GC-content: 35.9
  • method: sequence analysis

External links

@ref: 42937

culture collection no.: DSM 28259, CSUR P860

straininfo link

  • @ref: 96633
  • straininfo: 396791

literature

  • topic: Genetics
  • Pubmed-ID: 26649182
  • title: Noncontiguous finished genome sequence and description of Weeksella massiliensis sp. nov.
  • authors: Sankar SA, Lo CI, Fall B, Sambe-Ba B, Mediannikov O, Diallo I, Labas N, Faye N, Wade B, Raoult D, Fournier PE, Fenollar F
  • journal: New Microbes New Infect
  • DOI: 10.1016/j.nmni.2015.09.013
  • year: 2015
  • topic2: Phylogeny

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
42937Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28259Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28259)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
96633Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID396791.1