Strain identifier

BacDive ID: 140325

Type strain: Yes

Species: Anaerococcus rubeinfantis

Strain Designation: mt16

Strain history: <- S. Khelaifia, Timone Hospital, Marseille, France; mt 16 <- Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes

NCBI tax ID(s): 1720199 (species)

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General

@ref: 42932

BacDive-ID: 140325

DSM-Number: 101186

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Anaerococcus rubeinfantis mt16 is a mesophilic bacterium that was isolated from human stool specimen, Senegalese infant with severe acute malnutrition.

NCBI tax id

  • NCBI tax id: 1720199
  • Matching level: species

strain history

  • @ref: 42932
  • history: <- S. Khelaifia, Timone Hospital, Marseille, France; mt 16 <- Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes

doi: 10.13145/bacdive140325.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Peptoniphilaceae
  • genus: Anaerococcus
  • species: Anaerococcus rubeinfantis
  • full scientific name: Anaerococcus rubeinfantis corrig. Tidjani Alou et al. 2017

  • synonyms

    • @ref: 20215
    • synonym: Anaerococcus rubiinfantis

@ref: 42932

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Peptoniphilaceae

genus: Anaerococcus

species: Anaerococcus rubeinfantis

full scientific name: Anaerococcus rubeinfantis Tidjani Alou et al. 2017

strain designation: mt16

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 42932
  • name: PYG MEDIUM (MODIFIED) (DSMZ Medium 104)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/104
  • composition: Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water

culture temp

  • @ref: 42932
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine+hydrolysis
6838016024D-mannose+fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan+energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase+
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase+3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase+4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase+3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
42932-+---+----+----+-+---+----+--

Isolation, sampling and environmental information

isolation

  • @ref: 42932
  • sample type: human stool specimen, Senegalese infant with severe acute malnutrition
  • country: Senegal
  • origin.country: SEN
  • continent: Africa

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Gastrointestinal tract#Feces (Stool)
#Infection#Patient#Specimen

taxonmaps

  • @ref: 69479
  • File name: preview.99_8169.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_172;96_570;97_662;98_769;99_8169&stattab=map
  • Last taxonomy: Anaerococcus
  • 16S sequence: LN881592
  • Sequence Identity:
  • Total samples: 2244
  • soil counts: 1
  • aquatic counts: 9
  • animal counts: 2232
  • plant counts: 2

Sequence information

16S sequences

  • @ref: 42932
  • description: Anaerococcus rubiinfantis partial 16S rRNA gene, type strain mt16T
  • accession: LN881592
  • length: 1490
  • database: ena
  • NCBI tax ID: 1720199

Genome sequences

  • @ref: 66792
  • description: Anaerococcus rubeinfantis mt16
  • accession: 2775506914
  • assembly level: draft
  • database: img
  • NCBI tax ID: 1720199

GC content

  • @ref: 42932
  • GC-content: 29.5
  • method: sequence analysis

External links

@ref: 42932

culture collection no.: DSM 101186, CSUR P2032

straininfo link

  • @ref: 96628
  • straininfo: 403429

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
42932Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-101186Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 101186)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
96628Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID403429.1