Strain identifier

BacDive ID: 140308

Type strain: Yes

Species: Mobilicoccus caccae

Strain history: CCTCC AB 2013229 <-- Y. Jiang; Yunnan Inst. of Microbiol., Yunnan Univ., China; YIM 101593.

NCBI tax ID(s): 1859295 (species)

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General

@ref: 42915

BacDive-ID: 140308

DSM-Number: 27611

keywords: 16S sequence, Bacteria, facultative anaerobe, Gram-positive, motile, coccus-shaped

description: Mobilicoccus caccae DSM 27611 is a facultative anaerobe, Gram-positive, motile bacterium that was isolated from faeces of a primate .

NCBI tax id

  • NCBI tax id: 1859295
  • Matching level: species

strain history

@refhistory
42915<- Y. Jiang, Yunnan Univ., Yunnan Inst. Microbiol. (YIM), Kunming, China; YIM 101593
67770CCTCC AB 2013229 <-- Y. Jiang; Yunnan Inst. of Microbiol., Yunnan Univ., China; YIM 101593.

doi: 10.13145/bacdive140308.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Dermatophilaceae
  • genus: Mobilicoccus
  • species: Mobilicoccus caccae
  • full scientific name: Mobilicoccus caccae Chen et al. 2017

@ref: 42915

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Dermatophilaceae

genus: Mobilicoccus

species: Mobilicoccus caccae

full scientific name: Mobilicoccus caccae Chen et al. 2017

type strain: yes

Morphology

cell morphology

  • @ref: 43282
  • gram stain: positive
  • cell width: 0.5-1.0 µm
  • cell shape: coccus-shaped
  • motility: yes
  • flagellum arrangement: peritrichous

colony morphology

@refcolony colormedium used
43282orangeISP4
43282orangeISP5
43282orange-yellowISP2
43282orange-yellowNA
43282orange-yellowTSA

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
43282ISP4yes
43282ISP5yes
43282ISP2yes
43282Nutrient agar (NA)yes
43282Trypticase Soy Agar (TSA)yes
43282TSByes
42915GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
43282positivegrowth5-40
42915positivegrowth28mesophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
43282positivegrowth5-9alkaliphile
43282positiveoptimum7-8

Physiology and metabolism

oxygen tolerance

  • @ref: 43282
  • oxygen tolerance: facultative anaerobe

spore formation

  • @ref: 43282
  • type of spore: spore
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
43282NaClpositivegrowth0-9 %(w/v)
43282NaClpositiveoptimum0-3 %(w/v)

observation

  • @ref: 67770
  • observation: quinones: MK-8(H2)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4328217632nitrate+reduction
43282casein-hydrolysis
4328228017starch-hydrolysis
4328262968cellulose-hydrolysis
4328217634D-glucose+assimilation
4328228757fructose+assimilation
4328228260galactose+assimilation
4328237684mannose+assimilation
4328218222xylose+assimilation
4328230849L-arabinose+assimilation
4328217992sucrose+assimilation
4328216634raffinose+assimilation
4328216899D-mannitol+assimilation
4328216947citrate+assimilation
4328216449alanine+assimilation
4328225094lysine+assimilation
4328227897tryptophan+assimilation
4328217151xylitol-assimilation
4328237166xylan-assimilation
4328217634D-glucose+fermentation
4328216899D-mannitol+fermentation
4328217268myo-inositol+fermentation
4328217924D-sorbitol+fermentation
4328217992sucrose+fermentation
4328227613amygdalin+fermentation
4328262345L-rhamnose-fermentation
4328228053melibiose-fermentation
4328230849L-arabinose-fermentation

metabolite production

@refChebi-IDmetaboliteproduction
4328215688acetoinyes
4328235581indoleno
4328216136hydrogen sulfideno

enzymes

@refvalueactivityec
43282catalase+1.11.1.6
43282cytochrome oxidase-1.9.3.1
43282alkaline phosphatase+3.1.3.1
43282leucine arylamidase+3.4.11.1
43282cystine arylamidase+3.4.11.3
43282acid phosphatase+3.1.3.2
43282alpha-glucosidase+3.2.1.20
43282beta-glucosidase+3.2.1.21
43282arginine dihydrolase+3.5.3.6
43282gelatinase+
43282esterase (C 4)+/-
43282esterase Lipase (C 8)+/-
43282valine arylamidase+/-
43282trypsin+/-3.4.21.4
43282alpha-chymotrypsin+/-3.4.21.1
43282naphthol-AS-BI-phosphohydrolase+/-
43282lipase (C 14)-
43282alpha-galactosidase-3.2.1.22
43282beta-galactosidase-3.2.1.23
43282beta-glucuronidase-3.2.1.31
43282N-acetyl-beta-glucosaminidase-3.2.1.52
43282alpha-mannosidase-3.2.1.24
43282alpha-fucosidase-3.2.1.51
43282lysine decarboxylase-4.1.1.18
43282ornithine decarboxylase-4.1.1.17
43282urease-3.5.1.5
43282tryptophan deaminase-4.1.99.1

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    43282C13:02.6
    43282C14:01
    43282C15:1ω8c2.5
    43282C15:1ω6c0.7
    43282C15:020.2
    43282C16:1ω9c0.6
    43282C16:02.1
    43282C17:1ω8c28.5
    43282C17:1ω6c
    43282C17:02.5
    43282C18:1ω9c1.3
    43282C16:1ω6c / C16:1ω7c1.4
    43282anteiso-C17:1 B / iso-C17:1 I8.6
  • type of FA analysis: whole cell analysis
  • incubation medium: TSA
  • agar/liquid: agar
  • incubation temperature: 28
  • incubation time: 3
  • software version: Sherlock 6.1
  • system: MIS MIDI

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
42915faeces of a primate (Rhinopithecus roxellanae)Rhinopithecus roxellanaeYunnan province, Yunnan Wild Animal ParkChinaCHNAsia
43282faeces sample of a primate (Rhinopithecus roxellanae)Yunnan Wild Animal Park in Yunnan province, south-western ChinaChinaCHNAsia
67770Faeces of a primate (Rhinopithecus roxellanae) living in Yunnan Wild Animal Park in Yunnan ProvinceRhinopithecus roxellanaeChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Primates
#Host Body Product#Gastrointestinal tract#Feces (Stool)

taxonmaps

  • @ref: 69479
  • File name: preview.99_154902.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_58542;97_75758;98_102150;99_154902&stattab=map
  • Last taxonomy: Mobilicoccus caccae subclade
  • 16S sequence: KX214304
  • Sequence Identity:
  • Total samples: 1323
  • soil counts: 48
  • aquatic counts: 300
  • animal counts: 937
  • plant counts: 38

Safety information

risk assessment

  • @ref: 42915
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 42915
  • description: Mobilicoccus caccae strain YIM 101593 16S ribosomal RNA gene, partial sequence
  • accession: KX214304
  • length: 1512
  • database: ena
  • NCBI tax ID: 1859295

GC content

  • @ref: 42915
  • GC-content: 69.8
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 42915

culture collection no.: DSM 27611, CCTCC AB 2013229, YIM 101593, JCM 33578, NBRC 113072

straininfo link

  • @ref: 96613
  • straininfo: 404542

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny28671530Mobilicoccus caccae sp. nov., isolated from the faeces of the primate Rhinopithecus roxellanae.Chen X, Li QY, Li GD, Xu FJ, Jiang CL, Han L, Huang XS, Jiang YInt J Syst Evol Microbiol10.1099/ijsem.0.0019392017Actinomycetales/*classification/genetics/isolation & purification, Animals, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Feces/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Primates/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny34617879Agilicoccus flavus gen. nov., sp. nov., a novel member of the family Dermatophilaceae isolated from the Pearl River.Yin LZ, Liu ZT, Li JL, Wang PD, Dong L, Duan L, Luo XQ, Fang BZ, Li WJInt J Syst Evol Microbiol10.1099/ijsem.0.0050762021Actinobacteria/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rivers/microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
42915Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27611Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27611)
43282Xiu Chen, Qin-Yuan Li, Gui-Ding Li, Fang-Ji Xu, Cheng-Lin Jiang, Li Han, Xue-Shi Huang and Yi JiangMobilicoccus caccae sp. nov., isolated from the faeces of the primate Rhinopithecus roxellanae10.1099/ijsem.0.001939IJSEM 67: 2253-2257 201728671530
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
96613Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID404542.1