Strain identifier

BacDive ID: 140299

Type strain: Yes

Species: Pseudomonas lactis

Strain Designation: WS 4992

Strain history: <- M. Wenning, (ZIEL) TU Munich, Microbiology, Freising-Weihenstephan, Germany; WS 4992 <- M. Freiherr von Neubeck

NCBI tax ID(s): 1615674 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 42906

BacDive-ID: 140299

DSM-Number: 29167

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped, colony-forming

description: Pseudomonas lactis WS 4992 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from bovine raw milk.

NCBI tax id

  • NCBI tax id: 1615674
  • Matching level: species

strain history

  • @ref: 42906
  • history: <- M. Wenning, (ZIEL) TU Munich, Microbiology, Freising-Weihenstephan, Germany; WS 4992 <- M. Freiherr von Neubeck

doi: 10.13145/bacdive140299.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas lactis
  • full scientific name: Pseudomonas lactis von Neubeck et al. 2017

@ref: 42906

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Burkholderiales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas lactis

full scientific name: Pseudomonas lactis von Neubeck et al. 2017

strain designation: WS 4992

type strain: yes

Morphology

cell morphology

  • @ref: 43273
  • gram stain: negative
  • cell length: 2.6 µm
  • cell width: 0.75 µm
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 43273
  • colony size: 0.5-1.0 mm
  • colony color: beige
  • colony shape: circular
  • incubation period: 1 day
  • medium used: TSG

pigmentation

  • @ref: 43273
  • production: yes
  • name: Fluorescent pigments

multimedia

  • @ref: 42906
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_29167.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
43273TSGyestrypticase soy agar (TSA; Roth) supplemented with 1 % glucose
43273Reasoner's 2A agar (R2A)yes
43273cetrimide agaryes
42906NUTRIENT AGAR (DSMZ Medium 1)yesName: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled waterhttps://mediadive.dsmz.de/medium/1

culture temp

@refgrowthtypetemperaturerange
43273positivegrowth27-31mesophilic
43273positivegrowth4-35
42906positivegrowth28mesophilic

culture pH

@refabilitytypepH
43273positivegrowth5-8
43273positiveoptimum6.0-7.0

Physiology and metabolism

oxygen tolerance

  • @ref: 43273
  • oxygen tolerance: aerobe

spore formation

  • @ref: 43273
  • type of spore: endospore
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
43273NaClpositivegrowth0-6.0 %(w/v)
43273NaClpositiveoptimum0-1 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4327315963ribitol+carbon source
4327318333D-arabitol+carbon source
4327315824D-fructose+carbon source
4327317634D-glucose+carbon source
4327312936D-galactose+carbon source
4327362318D-lyxose+carbon source
4327316899D-mannitol+carbon source
4327316024D-mannose+carbon source
4327316988D-ribose+carbon source
4327317924D-sorbitol+carbon source
4327317992sucrose+carbon source
4327327082trehalose+carbon source
4327365327D-xylose+carbon source
4327317113erythritol+carbon source
4327317754glycerol+carbon source
4327317268myo-inositol+carbon source
4327330849L-arabinose+carbon source
4327318403L-arabitol+carbon source
43273506227N-acetylglucosamine+carbon source
4327332032potassium gluconate+carbon source
4327317151xylitol+carbon source
4327327613amygdalin-carbon source
4327318305arbutin-carbon source
4327317108D-arabinose-carbon source
4327317057cellobiose-carbon source
4327328847D-fucose-carbon source
4327317716lactose-carbon source
4327317306maltose-carbon source
432736731melezitose-carbon source
4327328053melibiose-carbon source
4327316634raffinose-carbon source
4327316443D-tagatose-carbon source
4327332528turanose-carbon source
4327316813galactitol-carbon source
4327328066gentiobiose-carbon source
4327328087glycogen-carbon source
4327318287L-fucose-carbon source
4327362345L-rhamnose-carbon source
4327317266L-sorbose-carbon source
4327365328L-xylose-carbon source
43273320061methyl alpha-D-glucopyranoside-carbon source
4327343943methyl alpha-D-mannoside-carbon source
4327374863methyl beta-D-xylopyranoside-carbon source
4327317814salicin-carbon source
4327317754glycerol+builds acid from
4327317113erythritol+builds acid from
4327330849L-arabinose+builds acid from
4327316988D-ribose+builds acid from
4327365327D-xylose+builds acid from
4327315963ribitol+builds acid from
4327312936D-galactose+builds acid from
4327317634D-glucose+builds acid from
4327315824D-fructose+builds acid from
4327316024D-mannose+builds acid from
4327362345L-rhamnose+builds acid from
4327317268myo-inositol+builds acid from
4327316899D-mannitol+builds acid from
4327317924D-sorbitol+builds acid from
4327317057cellobiose+builds acid from
4327328053melibiose+builds acid from
4327317992sucrose+builds acid from
4327327082trehalose+builds acid from
4327317151xylitol+builds acid from
4327328066gentiobiose+builds acid from
4327362318D-lyxose+builds acid from
4327328847D-fucose+builds acid from
4327317108D-arabinose+builds acid from
4327318403L-arabitol+builds acid from
432735291gelatin+hydrolysis
4327328017starch-hydrolysis
4327317632nitrate-reduction
4327316301nitrite-reduction
43273skimmed milk+degradation
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin+hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine+hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

@refChebi-IDmetaboliteproduction
432738653pyocyanineno
4327316136hydrogen sulfideno
4327335581indoleno
4327315688acetoinno
6836935581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
4327315688acetoin-
6836935581indole-

enzymes

@refvalueactivityec
43273beta-galactosidase-3.2.1.23
43273lysine decarboxylase-4.1.1.18
43273ornithine decarboxylase-4.1.1.17
43273urease-3.5.1.5
43273tryptophan deaminase-4.1.99.1
43273arginine dihydrolase+3.5.3.6
43273catalase+1.11.1.6
43273cytochrome oxidase+1.9.3.1
68369cytochrome oxidase+1.9.3.1
68369gelatinase+
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase+3.5.3.6

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    43273C12:02.6
    43273C16:031.7
    43273C18:01.1
    43273C18:1ω7c17
    43273C10:0 3OH2.8
    43273C12:0 2OH4.1
    43273C12:0 3OH3.9
    43273cyclo-C17:05.9
    43273C16:1ω7c / C15:0 iso 2OH29.5
  • type of FA analysis: whole cell analysis
  • incubation medium: TSB
  • incubation temperature: 28
  • incubation time: 1
  • system: MIS MIDI
  • cutoff value:

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
42906---+--+-+++++-++-++-+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
42906bovine raw milkSouthern GemanyGermanyDEUEurope
43273raw bovine milk

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Bovinae (Cow, Cattle)
#Host Body Product#Fluids#Milk

taxonmaps

  • @ref: 69479
  • File name: preview.99_199.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_61;97_89;98_98;99_199&stattab=map
  • Last taxonomy: Pseudomonas
  • 16S sequence: KP756923
  • Sequence Identity:
  • Total samples: 8172
  • soil counts: 874
  • aquatic counts: 1631
  • animal counts: 3216
  • plant counts: 2451

Safety information

risk assessment

  • @ref: 42906
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 42906
  • description: Pseudomonas lactis strain DSM 29167 16S ribosomal RNA gene, partial sequence
  • accession: KP756923
  • length: 1428
  • database: ena
  • NCBI tax ID: 1615674

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pseudomonas lactis DSM 29167GCA_001439845contigncbi1615674
66792Pseudomonas sp. DSM 291671615674.3wgspatric1615674
66792Pseudomonas lactis DSM 291672660238313draftimg1615674

GC content

@refGC-contentmethod
4327360
4290660.0sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes91.272yes
gram-positiveno98.116yes
anaerobicno98.294no
halophileno92.49no
spore-formingno94.397yes
thermophileno99.902yes
glucose-utilyes93.064yes
flagellatedyes81.681no
aerobicyes94.563yes
glucose-fermentno91.18yes

External links

@ref: 42906

culture collection no.: DSM 29167, LMG 28435

straininfo link

  • @ref: 96604
  • straininfo: 403013

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny28141500Pseudomonas lactis sp. nov. and Pseudomonas paralactis sp. nov., isolated from bovine raw milk.von Neubeck M, Huptas C, Gluck C, Krewinkel M, Stoeckel M, Stressler T, Fischer L, Hinrichs J, Scherer S, Wenning MInt J Syst Evol Microbiol10.1099/ijsem.0.0018362017Animals, Bacterial Typing Techniques, Base Composition, Cattle, DNA, Bacterial/genetics, Fatty Acids/chemistry, Milk/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pseudomonas/*classification/genetics/isolation & purification, Quinones/chemistry, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome
Phylogeny31922466Pseudomonas carnis sp. nov., isolated from meat.Lick S, Krockel L, Wibberg D, Winkler A, Blom J, Bantleon A, Goesmann A, Kalinowski JInt J Syst Evol Microbiol10.1099/ijsem.0.0039282020Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Food Microbiology, Genes, Bacterial, Germany, Meat/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Poultry, Pseudomonas/*classification/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Swine, Ubiquinone/chemistryBiotechnology
Phylogeny34309505Pseudomonas lactucae sp. nov., a pathogen causing bacterial rot of lettuce in Japan.Sawada H, Fujikawa T, Satou MInt J Syst Evol Microbiol10.1099/ijsem.0.0049172021Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Japan, Lettuce/*microbiology, Nucleic Acid Hybridization, *Phylogeny, Plant Diseases/*microbiology, Pseudomonas/*classification/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
42906Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29167Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29167)
43273Mario von Neubeck, Christopher Huptas, Claudia Glück, Manuel Krewinkel, Marina Stoeckel, Timo Stressler, Lutz Fischer, Jörg Hinrichs, Siegfried Scherer and Mareike WenningPseudomonas lactis sp. nov. and Pseudomonas paralactis sp.nov., isolated from bovine raw milk10.1099/ijsem.0.001836IJSEM 67: 1656-1664 201728141500
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68369Automatically annotated from API 20NE
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
96604Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID403013.1