Strain identifier
BacDive ID: 140284
Type strain: 
Species: Mycobacterium virginiense
Strain Designation: MO-233
Strain history: <- R. Vasireddy, Univ. Texas; MO-233 <- R. J. WallaceJr, UTHSCT, Tyler, Texas, USA; <- State Health Laboratory, Commonwealth of Virginia, Richmond, VA;
NCBI tax ID(s): 1795032 (species)
version 8.1 (current version)
General
@ref: 42891
BacDive-ID: 140284
DSM-Number: 100883
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Mycobacterium virginiense MO-233 is a mesophilic bacterium that was isolated from surgical biopsy taken from a post-traumatic tenosynovitis in the hand of an adult woman.
NCBI tax id
- NCBI tax id: 1795032
- Matching level: species
strain history
- @ref: 42891
- history: <- R. Vasireddy, Univ. Texas; MO-233 <- R. J. WallaceJr, UTHSCT, Tyler, Texas, USA; <- State Health Laboratory, Commonwealth of Virginia, Richmond, VA;
doi: 10.13145/bacdive140284.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium virginiense
- full scientific name: Mycobacterium virginiense Vasireddy et al. 2017
synonyms
- @ref: 20215
- synonym: Mycolicibacter virginiensis
@ref: 42891
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium virginiense
full scientific name: Mycobacterium virginiense Vasireddy et al. 2017
strain designation: MO-233
type strain: yes
Morphology
multimedia
- @ref: 42891
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_100883.jpg
- caption: Medium 250 37°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 42891
- name: MIDDLEBROOK MEDIUM (DSMZ Medium 645)
- growth: yes
- link: https://mediadive.dsmz.de/medium/645
- composition: Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
culture temp
- @ref: 42891
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 42891
- sample type: surgical biopsy taken from a post-traumatic tenosynovitis in the hand of an adult woman
- geographic location: Virginia, Richmond
- country: USA
- origin.country: USA
- continent: North America
- latitude: 37.5364
- longitude: -77.4569
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body-Site | #Limb | #Hand |
| #Infection | #Patient | #Biopsy |
taxonmaps
- @ref: 69479
- File name: preview.99_473.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_312;97_346;98_391;99_473&stattab=map
- Last taxonomy: Mycolicibacter
- 16S sequence: KR025879
- Sequence Identity:
- Total samples: 3339
- soil counts: 1370
- aquatic counts: 1264
- animal counts: 528
- plant counts: 177
Sequence information
16S sequences
- @ref: 42891
- description: Mycobacterium virginiense strain MO-233 16S ribosomal RNA gene, complete sequence
- accession: KR025879
- length: 1507
- database: ena
- NCBI tax ID: 1795032
Genome sequences
- @ref: 66792
- description: Mycolicibacter virginiensis DSM 100883
- accession: GCA_022374935
- assembly level: complete
- database: ncbi
- NCBI tax ID: 1795032
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 98.606 | no |
| flagellated | no | 98.606 | no |
| gram-positive | yes | 89.686 | no |
| gram-positive | yes | 89.686 | no |
| anaerobic | no | 99.33 | no |
| anaerobic | no | 99.33 | no |
| aerobic | yes | 89.264 | no |
| aerobic | yes | 89.264 | no |
| halophile | no | 91.481 | no |
| halophile | no | 91.481 | no |
| spore-forming | no | 86.951 | no |
| spore-forming | no | 86.951 | no |
| motile | no | 94.386 | no |
| motile | no | 94.386 | no |
| glucose-ferment | no | 89.845 | no |
| glucose-ferment | no | 89.845 | no |
| thermophile | no | 98.749 | yes |
| thermophile | no | 98.749 | yes |
| glucose-util | yes | 54.754 | no |
| glucose-util | yes | 54.754 | no |
External links
@ref: 42891
culture collection no.: DSM 100883, CIP 110918
straininfo link
- @ref: 96590
- straininfo: 405770
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 26962085 | Mycobacterium arupense, Mycobacterium heraklionense, and a Newly Proposed Species, "Mycobacterium virginiense" sp. nov., but Not Mycobacterium nonchromogenicum, as Species of the Mycobacterium terrae Complex Causing Tenosynovitis and Osteomyelitis. | Vasireddy R, Vasireddy S, Brown-Elliott BA, Wengenack NL, Eke UA, Benwill JL, Turenne C, Wallace RJ Jr | J Clin Microbiol | 10.1128/JCM.00198-16 | 2016 | Adult, Aged, Antitubercular Agents/pharmacology, DNA, Ribosomal/chemistry/genetics, DNA-Directed RNA Polymerases, Female, Humans, Male, Microbial Sensitivity Tests, Middle Aged, Mycobacterium/*classification/drug effects/genetics/*isolation & purification, Mycobacterium Infections, Nontuberculous/*microbiology, Osteomyelitis/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Tenosynovitis/*microbiology, United States, Young Adult | Pathogenicity |
| Phylogeny | 35275144 | Isolation and identification of mycobacteria responsible for tuberculosis of dromedaries in Algeria. | Boukert R, Kaya Koksalan O, Kocagoz T, Akcelik S, Ifticene M, Berber A, Saegerman C, Sahraoui N | Rev Sci Tech | 10.20506/rst.39.3.3170 | 2020 |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 42891 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100883 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100883) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 96590 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID405770.1 |