Strain identifier

BacDive ID: 140282

Type strain: Yes

Species: Vitiosangium subalbum

Strain Designation: MCy10944

Strain history: <- R.P. Awal, Helmholtz Institute for Pharmaceutical Research, Saarbrücken, Germany; MCy10944

NCBI tax ID(s): 1867797 (species)

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General

@ref: 42889

BacDive-ID: 140282

DSM-Number: 102953

keywords: 16S sequence, Bacteria, aerobe, chemoheterotroph, spore-forming, rod-shaped

description: Vitiosangium subalbum MCy10944 is an aerobe, chemoheterotroph, spore-forming bacterium that was isolated from soil sample provided by National College, Tribhuvan University, Nepal.

NCBI tax id

  • NCBI tax id: 1867797
  • Matching level: species

strain history

  • @ref: 42889
  • history: <- R.P. Awal, Helmholtz Institute for Pharmaceutical Research, Saarbrücken, Germany; MCy10944

doi: 10.13145/bacdive140282.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Myxococcales
  • family: Archangiaceae
  • genus: Vitiosangium
  • species: Vitiosangium subalbum
  • full scientific name: Vitiosangium subalbum Awal et al. 2017

@ref: 42889

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Myxococcales

family: Archangiaceae

genus: Vitiosangium

species: Vitiosangium subalbum

full scientific name: Vitiosangium subalbum Awal et al. 2017

strain designation: MCy10944

type strain: yes

Morphology

cell morphology

  • @ref: 43219
  • cell length: 6.0-16.0 µm
  • cell width: 0.8-1.0 µm
  • cell shape: rod-shaped

colony morphology

  • @ref: 43219
  • colony color: smoky whitish
  • medium used: buffered VY/2 agar

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
42889AMB MEDIUM FOR RACEMICYSTIS (DSMZ Medium 1614)yeshttps://mediadive.dsmz.de/medium/1614Name: AMB MEDIUM FOR RACEMICYSTIS SPP. (DSMZ Medium 1614) Composition: Agar 14.0 g/l Starch 5.0 g/l Casitone 2.5 g/l MgSO4 x 7 H2O 0.5 g/l K2HPO4 0.25 g/l Distilled water
42889VY/2 AGAR (DSMZ Medium 9)yeshttps://mediadive.dsmz.de/medium/9Name: VY/2 AGAR (DSMZ Medium 9) Composition: Agar 15.0 g/l Baker's yeast 5.0 g/l CaCl2 x 2 H2O 1.36 g/l Vitamin B12 0.0005 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
43219positivegrowth18-37
42889positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
43219positivegrowth5.5-9.0alkaliphile
43219positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 43219
  • oxygen tolerance: aerobe

nutrition type

  • @ref: 43219
  • type: chemoheterotroph

spore formation

  • @ref: 43219
  • spore description: Oval to short rods
  • type of spore: myxospore
  • spore formation: yes

halophily

  • @ref: 43219
  • salt: NaCl
  • growth: positive
  • tested relation: maximum
  • concentration: 0.5 %(w/v)

observation

  • @ref: 43219
  • observation: Lyses E. coli, M. luteus and H. anomala

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
43219milk+hydrolysis
43219casein+hydrolysis
43219starch+hydrolysis28017
43219tween 20+hydrolysis53424
43219tween 80+hydrolysis53426
43219xylan+hydrolysis37166
43219meat extract+growth
43219tryptone+growth
43219peptone+growth
43219yeast extract+growth
43219polypeptone+growth
43219starch+growth28017
43219arabinose+growth22599

antibiotic resistance

@refChEBImetaboliteis antibioticis resistantresistance conc.is sensitivesensitivity conc.
4321928971ampicillinyesyes50 µg/mL
4321928669bacitracinyesyes50 µg/mL
4321971321fusidateyesyes
4321917833gentamicinyesyes
4321924753hygromycinyesyes50 µg/mL
432196104kanamycinyesyes50 µg/mL
4321981419kasugamycinyesyes50 µg/mL
432197507neomycinyesyes
4321927701oxytetracyclineyesyes
432193542cephalothinyesyes50 µg/mL
432199215spectinomycinyesyes50 µg/mL
4321929693thiostreptonyesyes

enzymes

@refvalueactivityec
43219alkaline phosphatase+3.1.3.1
43219esterase (C 4)+
43219esterase Lipase (C 8)+
43219leucine arylamidase+3.4.11.1
43219valine arylamidase+
43219cystine arylamidase+3.4.11.3
43219trypsin-3.4.21.4
43219alpha-chymotrypsin+3.4.21.1
43219acid phosphatase+3.1.3.2
43219naphthol-AS-BI-phosphohydrolase+
43219beta-galactosidase+/-3.2.1.23
43219alpha-glucosidase+/-3.2.1.20
43219beta-glucosidase+/-3.2.1.21
43219lipase (C 14)-
43219alpha-galactosidase-3.2.1.22
43219beta-glucuronidase-3.2.1.31
43219N-acetyl-beta-glucosaminidase-3.2.1.52
43219alpha-mannosidase-3.2.1.24
43219alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    43219C10:00.2
    43219C14:01
    43219C14:10.5
    43219C15:00.4
    43219C16:05.5
    43219C16:111.3
    43219C18:00.6
    43219C14:0 3OH0.2
    43219C16:0 3OH0.1
    43219C16:0 2OH1.6
    43219C16:0 OAG0.1
    43219C16:20.1
    43219C11:0 iso0.2
    43219C13:0 iso0.5
    43219C14:0 iso0.5
    43219C15:0 iso20.3
    43219C15:1 iso0.1
    43219C16:0 iso5.1
    43219C17:0 iso8.3
    43219C17:1 iso2.4
    43219C15:0 iso 3OH2.7
    43219C16:0 iso 2OH0.1
    43219C17:0 iso 2OH26.6
    43219iso-C18:0 2-OH0.1
    43219iso-C15:0 DMA5.8
    43219iso-C15:0 OAG4.4
    43219iso-C17:0 OAG0.1
    43219C16:1 DMA0.2
    43219C18:1ω9c0.9
    43219iso-C16:0 OAG0.1
  • type of FA analysis: whole cell analysis
  • incubation medium: VTM medium
  • agar/liquid: liquid
  • incubation time: 5
  • system: MIS MIDI

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
42889soil sample provided by National College, Tribhuvan University, NepalNepalNPLAsia
43219Nepalese soil sampleNepalNPLAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_172960.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_211;96_740;97_958;98_13864;99_172960&stattab=map
  • Last taxonomy: Vitiosangium subalbum
  • 16S sequence: KX430041
  • Sequence Identity:
  • Total samples: 2191
  • soil counts: 1650
  • aquatic counts: 130
  • animal counts: 83
  • plant counts: 328

Safety information

risk assessment

  • @ref: 42889
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 42889
  • description: Vitiosangium subalbum strain MCy10944 16S ribosomal RNA gene, partial sequence
  • accession: KX430041
  • length: 1528
  • database: ena
  • NCBI tax ID: 1867797

GC content

  • @ref: 42889
  • GC-content: 74.6
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 42889

culture collection no.: DSM 102953, NCCB 100601

straininfo link

  • @ref: 96588
  • straininfo: 407104

literature

  • topic: Phylogeny
  • Pubmed-ID: 28141508
  • title: Vitiosangium cumulatum gen. nov., sp. nov. and Vitiosangium subalbum sp. nov., soil myxobacteria, and emended descriptions of the genera Archangium and Angiococcus, and of the family Cystobacteraceae.
  • authors: Awal RP, Garcia R, Gemperlein K, Wink J, Kunwar B, Parajuli N, Muller R
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001829
  • year: 2017
  • mesh: Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, Myxococcales/*classification/genetics/isolation & purification, Nepal, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
42889Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102953Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102953)
43219Ram Prasad Awal, Ronald Garcia, Katja Gemperlein, Joachim Wink, Bikram Kunwar, Niranjan Parajuli and Rolf MüllerVitiosangium cumulatum gen. nov., sp. nov. and Vitiosangium subalbum sp. nov., soil myxobacteria, and emended descriptions of the genera Archangium and Angiococcus, and of the family Cystobacteraceae10.1099/ijsem.0.001829IJSEM 67: 1422-1430 201728141508
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
96588Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID407104.1