Strain identifier

BacDive ID: 140276

Type strain: Yes

Species: Halomonas alkalicola

Strain Designation: 56-L4-10aEn

Strain history: <- Y. Ge, CICC; 56-L4-10aEn

NCBI tax ID(s): 1930622 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 8.1 (current version)

General

@ref: 42883

BacDive-ID: 140276

DSM-Number: 103354

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped, colony-forming

description: Halomonas alkalicola 56-L4-10aEn is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from soap-making tank of a household product plant.

NCBI tax id

  • NCBI tax id: 1930622
  • Matching level: species

strain history

  • @ref: 42883
  • history: <- Y. Ge, CICC; 56-L4-10aEn

doi: 10.13145/bacdive140276.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Oceanospirillales
  • family: Halomonadaceae
  • genus: Halomonas
  • species: Halomonas alkalicola
  • full scientific name: Halomonas alkalicola Tang et al. 2017

@ref: 42883

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Halomonadaceae

genus: Halomonas

species: Halomonas alkalicola

full scientific name: Halomonas alkalicola Tang et al. 2017

strain designation: 56-L4-10aEn

type strain: yes

Morphology

cell morphology

  • @ref: 43185
  • gram stain: negative
  • cell length: 1.5-2.1 µm
  • cell width: 0.5-0.6 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 43185
  • colony color: ochre
  • colony shape: circular
  • medium used: tryptic soy agar (TSA)

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
43185tryptic soy agar (TSA)yes
42883BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
43185positiveoptimum28-30mesophilic
43185positivegrowth15-37
42883positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
43185positivegrowth7-12.5alkaliphile
43185positiveoptimum9-10

Physiology and metabolism

oxygen tolerance

  • @ref: 43185
  • oxygen tolerance: aerobe

spore formation

  • @ref: 43185
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentrationhalophily level
43185NaClpositivegrowth0-8 %(w/v)
43185NaClpositiveoptimum0-2 %(w/v)
43185moderately halophilic

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4318517754glycerol-builds acid from
4318517113erythritol-builds acid from
4318517108D-arabinose-builds acid from
4318530849L-arabinose-builds acid from
4318516988D-ribose-builds acid from
4318565327D-xylose-builds acid from
4318565328L-xylose-builds acid from
4318515963ribitol-builds acid from
4318516024D-mannose-builds acid from
4318517266L-sorbose-builds acid from
4318562345L-rhamnose-builds acid from
4318516813galactitol-builds acid from
4318517268myo-inositol-builds acid from
4318529864mannitol-builds acid from
4318530911sorbitol-builds acid from
4318524265gluconate-builds acid from
43185320061methyl alpha-D-glucopyranoside-builds acid from
43185506227N-acetylglucosamine-builds acid from
4318527613amygdalin-builds acid from
4318518305arbutin-builds acid from
4318517814salicin-builds acid from
4318517057cellobiose-builds acid from
4318517716lactose-builds acid from
4318528053melibiose-builds acid from
4318515443inulin-builds acid from
4318528017starch-builds acid from
4318528087glycogen-builds acid from
4318517151xylitol-builds acid from
4318528066gentiobiose-builds acid from
4318562318D-lyxose-builds acid from
4318516443D-tagatose-builds acid from
4318518287L-fucose-builds acid from
4318518333D-arabitol-builds acid from
4318518403L-arabitol-builds acid from
4318543943methyl alpha-D-mannoside-builds acid from
43185168082-dehydro-D-gluconate-builds acid from
43185581435-dehydro-D-gluconate-builds acid from
4318512936D-galactose-builds acid from
4318517634D-glucose-builds acid from
4318515824D-fructose-builds acid from
4318517306maltose-builds acid from
4318527082trehalose-builds acid from
4318517992sucrose-builds acid from
431856731melezitose-builds acid from
4318532528turanose-builds acid from
4318528847D-fucose-builds acid from
4318516634raffinose+builds acid from
4318516991dna-hydrolysis
431854853esculin-hydrolysis
431855291gelatin-hydrolysis
4318528017starch-hydrolysis
4318553424tween 20-hydrolysis
4318553426tween 80-hydrolysis
4318518186tyrosine-hydrolysis
4318516947citrate-carbon source
4318517632nitrate-reduction
4318517234glucose-assimilation
4318522599arabinose-assimilation
4318537684mannose-assimilation
4318529864mannitol-assimilation
43185506227N-acetylglucosamine-assimilation
4318517306maltose-assimilation
4318524265gluconate-assimilation
4318527689decanoate-assimilation
4318517128adipate-assimilation
4318525115malate-assimilation
4318553258sodium citrate-assimilation
4318518401phenylacetate-assimilation

metabolite production

@refChebi-IDmetaboliteproduction
4318515688acetoinno
4318516136hydrogen sulfideno
4318535581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testcitrate test
4318515688acetoin-
4318516947citrate-

enzymes

@refvalueactivityec
43185cytochrome oxidase+1.9.3.1
43185catalase+1.11.1.6
43185lysine decarboxylase-4.1.1.18
43185ornithine decarboxylase-4.1.1.17
43185tryptophan deaminase-4.1.99.1
43185arginine dihydrolase-3.5.3.6
43185beta-galactosidase-3.2.1.23
43185gelatinase-
43185urease-3.5.1.5

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    43185C18:1ω7c / C18:1ω6c53.9
    43185C16:015.2
  • type of FA analysis: whole cell analysis
  • incubation medium: tryptic soy agar (TSA)
  • agar/liquid: agar
  • system: MIS MIDI
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentenrichment cultureisolation procedure
42883soap-making tank of a household product plantBeijingChinaCHNAsia
43185soap-making tank of a household product plantChinaCHNAsiatrypticase soy agar (TSA, BD 236950)serial dilution plating technique

isolation source categories

Cat1Cat2Cat3
#Engineered#Built environment#Container (Reservoir)
#Engineered#Industrial#Plant (Factory)

taxonmaps

  • @ref: 69479
  • File name: preview.99_11361.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_48;96_430;97_996;98_8492;99_11361&stattab=map
  • Last taxonomy: Halomonas
  • 16S sequence: KU530128
  • Sequence Identity:
  • Total samples: 2544
  • soil counts: 292
  • aquatic counts: 759
  • animal counts: 1357
  • plant counts: 136

Safety information

risk assessment

  • @ref: 42883
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 42883
  • description: Halomonas alkalicola strain CICC 11012s 16S ribosomal RNA gene, partial sequence
  • accession: KU530128
  • length: 1500
  • database: ena
  • NCBI tax ID: 1930622

GC content

  • @ref: 42883
  • GC-content: 63.2
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 42883

culture collection no.: DSM 103354, CICC 11012s

straininfo link

  • @ref: 96582
  • straininfo: 403902

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny28005522Halomonas alkalicola sp. nov., isolated from a household product plant.Tang X, Zhai L, Lin Y, Yao S, Wang L, Ge Y, Liu Y, Zhang X, Zhang T, Zhang L, Liu J, Cheng CInt J Syst Evol Microbiol10.1099/ijsem.0.0017572017Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/chemistry, Genotype, Halomonas/*classification/genetics/isolation & purification, *Household Products, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryGenetics
Genetics29270851Genome sequencing and heterologous expression of antiporters reveal alkaline response mechanisms of Halomonas alkalicola.Zhai L, Xie J, Lin Y, Cheng K, Wang L, Yue F, Guo J, Liu J, Yao SExtremophiles10.1007/s00792-017-0991-62017Adaptation, Physiological, Bacterial Proteins/genetics/*metabolism, Extreme Environments, *Genome, Bacterial, Halomonas/*genetics, Potassium-Hydrogen Antiporters/genetics/*metabolism, Salinity, Sodium-Hydrogen Exchangers/genetics/*metabolismMetabolism
Phylogeny29948829Halomonas tibetensis sp. nov., isolated from saline lakes on Tibetan Plateau.Lu HB, Xing P, Zhai L, Phurbu D, Tang Q, Wu QLJ Microbiol10.1007/s12275-018-8076-52018Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Halomonas/chemistry/classification/*genetics/*isolation & purification, Lakes/*microbiology, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, *Salinity, Sequence Analysis, DNA, TibetTranscriptome
Metabolism33123748Mechanism of TonB-dependent transport system in Halomonas alkalicola CICC 11012s in response to alkaline stress.Zhai L, Xie J, Feng H, Sun S, Cheng K, Yao SExtremophiles10.1007/s00792-020-01209-62020Alkalies, Bacterial Proteins/*genetics/metabolism, Biological Transport, Escherichia coli/metabolism, Halomonas/genetics/*metabolism, Hydrogen-Ion Concentration, Iron/*metabolism, Membrane Proteins/*genetics/metabolism, *Stress, PhysiologicalStress

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
42883Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-103354Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103354)
43185Xiaoli Tang, Lei Zhai, Yafang Lin, Su Yao, Lijiang Wang, Yuanyuan Ge, Yang Liu, Xin Zhang, Tianci Zhang, Lu Zhang, Jiquan Liu, Chi ChengHalomonas alkalicola sp. nov., isolated from a household product plant10.1099/ijsem.0.001757IJSEM 67: 1546-1550 201728005522
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
96582Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID403902.1