Strain identifier

BacDive ID: 140263

Type strain: Yes

Species: Streptococcus caviae

Strain history: <- S. Palakawong Na Ayudthaya, Wageningen University; Cavy grass 6

NCBI tax ID(s): 1930533 (species)

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General

@ref: 42870

BacDive-ID: 140263

DSM-Number: 102819

keywords: 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-positive, coccus-shaped, colony-forming

description: Streptococcus caviae DSM 102819 is a facultative anaerobe, mesophilic, Gram-positive bacterium that forms circular colonies and was isolated from faeces of guinea pigs .

NCBI tax id

  • NCBI tax id: 1930533
  • Matching level: species

strain history

  • @ref: 42870
  • history: <- S. Palakawong Na Ayudthaya, Wageningen University; Cavy grass 6

doi: 10.13145/bacdive140263.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus caviae
  • full scientific name: Streptococcus caviae Palakawong Na Ayudthaya et al. 2017

@ref: 42870

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus caviae

full scientific name: Streptococcus caviae Palakawong Na Ayudthaya et al. 2017

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
43214positive0.5-0.8 µm0.5 µmcoccus-shapedno
43214oval-shaped

colony morphology

  • @ref: 43214
  • colony size: 1-2 mm
  • colony color: white
  • colony shape: circular
  • incubation period: 2 days
  • medium used: RCM (Reinforced Clostridial Medium)

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
43214RCM (Reinforced Clostridial Medium)yes
42870COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
42870TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
43214positiveoptimum37mesophilic
43214positivegrowth25-40
42870positivegrowth37mesophilic

culture pH

@refabilitytypepHPH range
43214positivegrowth4.5-9.5alkaliphile
43214positiveoptimum8

Physiology and metabolism

oxygen tolerance

  • @ref: 43214
  • oxygen tolerance: facultative anaerobe

spore formation

  • @ref: 43214
  • type of spore: spore
  • spore formation: no

halophily

  • @ref: 43214
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-4.5 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4321418333D-arabitol+fermentation
4321417057cellobiose+fermentation
4321416813galactitol+fermentation
4321415824D-fructose+fermentation
4321412936D-galactose+fermentation
4321417306maltose+fermentation
4321416899D-mannitol+fermentation
4321416024D-mannose+fermentation
4321416634raffinose+fermentation
4321417992sucrose+fermentation
4321417924D-sorbitol+fermentation
4321417266L-sorbose+fermentation
4321427082trehalose+fermentation
4321415443inulin+fermentation
43214dried grass extract+fermentation
4321417108D-arabinose-fermentation
4321418403L-arabitol-fermentation
4321424996lactate-fermentation
4321416988D-ribose-fermentation
4321417151xylitol-fermentation
4321465327D-xylose-fermentation
4321485146carboxymethylcellulose-fermentation
4321462968cellulose-fermentation
4321417057cellobiose-fermentation
432146364laminarin-fermentation
432146457lignin-fermentation
4321417309pectin-fermentation
4321428017starch-fermentation
4321437166xylan-fermentation
43214506227N-acetylglucosamine+builds acid from
4321427613amygdalin+builds acid from
4321418333D-arabitol+builds acid from
4321418305arbutin+builds acid from
4321416813galactitol+builds acid from
43214esculin ferric citrate+builds acid from
4321415824D-fructose+builds acid from
4321428066gentiobiose+builds acid from
4321417716lactose+builds acid from
4321428053melibiose+builds acid from
4321432032potassium gluconate+builds acid from
4321417814salicin+builds acid from
4321416443D-tagatose+builds acid from
432146731melezitose+assimilation
43214320055methyl beta-D-glucopyranoside+assimilation
43214606565hippurate+/-hydrolysis
4321443943methyl alpha-D-mannoside-fermentation
4321417924D-sorbitol+builds acid from
4321432032potassium gluconate+fermentation
6838129016arginine-hydrolysis
6838116988D-ribose-builds acid from
6838116899D-mannitol+builds acid from
6838130911sorbitol+builds acid from
6838117716lactose+builds acid from
6838127082trehalose+builds acid from
6838116634raffinose+builds acid from
6838117992sucrose+builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin-builds acid from
68381606565hippurate-hydrolysis
6838128087glycogen-builds acid from
6838127941pullulan-builds acid from
6838117306maltose+builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside+builds acid from
6838116443D-tagatose-builds acid from
6838116199urea-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
4321415688acetoinyes
6838115688acetoinyes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-test
4321415688acetoin+
6838115688acetoin+

enzymes

@refvalueactivityec
43214catalase-1.11.1.6
43214cytochrome oxidase-1.9.3.1
43214alpha-galactosidase+3.2.1.22
43214beta-glucosidase+3.2.1.21
43214tripeptide aminopeptidase+3.4.11.4
43214arginine dihydrolase+3.5.3.6
43214beta-mannosidase+/-3.2.1.25
43214alpha-glucosidase+3.2.1.20
43214acid phosphatase+3.1.3.2
43214cystine arylamidase+3.4.11.3
43214esterase (C 4)+
43214esterase Lipase (C 8)+
43214lipase (C 14)+
43214leucine arylamidase+3.4.11.1
43214naphthol-AS-BI-phosphohydrolase+
43214valine arylamidase+/-
43214urease+3.5.1.5
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase-3.1.3.1
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase+3.2.1.21
68381arginine dihydrolase-3.5.3.6

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
42870-+--+/---++++++---++-------+--+---
42870-+-----++++++---++-------+--+---

Isolation, sampling and environmental information

isolation

@refsample typehost speciescountryorigin.countrycontinentlatitudelongitudegeographic location
42870faeces of guinea pigs (Cavia porcellus)Cavia porcellusNetherlandsNLDEurope51.96715.6586
43214faecal samples of guinea pigsNetherlandsNLDEuropeEde, The Netherlands

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Rodentia (Other)
#Host Body Product#Gastrointestinal tract#Feces (Stool)

Safety information

risk assessment

  • @ref: 42870
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 42870
  • description: Streptococcus caviae partial 16S rRNA gene, strain Cavy grass 6
  • accession: LT546457
  • length: 1412
  • database: ena
  • NCBI tax ID: 1930533

GC content

  • @ref: 42870
  • GC-content: 42.6
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 42870

culture collection no.: DSM 102819, TISTR 2371, Cavy grass 6

straininfo link

  • @ref: 96569
  • straininfo: 402107

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny28008820Streptococcus caviae sp. nov., isolated from guinea pig faecal samples.Palakawong Na Ayudthaya S, Hilderink LJ, Oost JV, Vos WM, Plugge CMInt J Syst Evol Microbiol10.1099/ijsem.0.0017582017Animals, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/*microbiology, Guinea Pigs/*microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptococcus/*classification/genetics/isolation & purificationTranscriptome
Genetics28360157Draft Genome Sequence of Streptococcus caviae Strain Cavy grass 6(T), Isolated from Domesticated Guinea Pig Fecal Samples.Palakawong Na Ayudthaya S, Marshall IP, Schreiber L, Plugge CMGenome Announc10.1128/genomeA.00080-172017Phylogeny

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
42870Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102819Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102819)
43214Susakul Palakawong Na Ayudthaya, Loes J. Hilderink, John van der Oost, Willem M. de Vos and Caroline M. PluggeStreptococcus caviae sp. nov., isolated from guinea pig faecal samples10.1099/ijsem.0.001758IJSEM 67: 1551-1556 201728008820
68381Automatically annotated from API rID32STR
96569Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID402107.1