Strain identifier

BacDive ID: 140230

Type strain: Yes

Species: Streptococcus pantholopis

Strain Designation: TA 26, TA26

Strain history: <- X. Bai, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China; TA26

NCBI tax ID(s): 1811193 (species)

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General

@ref: 42837

BacDive-ID: 140230

DSM-Number: 102135

keywords: 16S sequence, Bacteria, facultative anaerobe, psychrophilic, Gram-positive, coccus-shaped

description: Streptococcus pantholopis TA 26 is a facultative anaerobe, psychrophilic, Gram-positive bacterium that was isolated from fresh faeces of a Tibetan antelope .

NCBI tax id

  • NCBI tax id: 1811193
  • Matching level: species

strain history

  • @ref: 42837
  • history: <- X. Bai, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China; TA26

doi: 10.13145/bacdive140230.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Streptococcaceae
  • genus: Streptococcus
  • species: Streptococcus pantholopis
  • full scientific name: Streptococcus pantholopis Bai et al. 2016

@ref: 42837

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Streptococcaceae

genus: Streptococcus

species: Streptococcus pantholopis

full scientific name: Streptococcus pantholopis Bai et al. 2016

strain designation: TA 26, TA26

type strain: yes

Morphology

cell morphology

  • @ref: 43135
  • gram stain: positive
  • cell width: 0.4-0.7 µm
  • cell shape: coccus-shaped
  • motility: no

colony morphology

  • @ref: 43135
  • type of hemolysis: alpha
  • hemolysis ability: 1
  • colony size: 0.75-1.00 mm
  • incubation period: 2 days
  • medium used: Blood agar

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
43135Blood agaryes
42837COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

@refgrowthtypetemperaturerange
43135nogrowth15psychrophilic
43135nogrowth4psychrophilic
43135positivegrowth42thermophilic
43135positivegrowth37mesophilic
43135positivegrowth30mesophilic
43135positivegrowth22psychrophilic
42837positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 43135
  • oxygen tolerance: facultative anaerobe

spore formation

  • @ref: 43135
  • type of spore: spore
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
43135NaClpositivegrowth3.5 %(w/v)
43135NaClnogrowth4.5 %(w/v)
43135NaClnogrowth6.5 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4313512936D-galactose+builds acid from
4313517634D-glucose+builds acid from
4313515824D-fructose+builds acid from
4313516024D-mannose+builds acid from
4313529864mannitol+builds acid from
4313530911sorbitol+builds acid from
43135506227N-acetylglucosamine+builds acid from
4313527613amygdalin+builds acid from
4313518305arbutin+builds acid from
4313517814salicin+builds acid from
4313517057cellobiose+builds acid from
4313517306maltose+builds acid from
4313517716lactose+builds acid from
4313517992sucrose+builds acid from
4313527082trehalose+builds acid from
4313528066gentiobiose+builds acid from
4313516443D-tagatose+builds acid from
4313517754glycerol-builds acid from
4313517113erythritol-builds acid from
4313517108D-arabinose-builds acid from
4313530849L-arabinose-builds acid from
4313516988D-ribose-builds acid from
4313565327D-xylose-builds acid from
4313565328L-xylose-builds acid from
4313515963ribitol-builds acid from
4313574863methyl beta-D-xylopyranoside-builds acid from
4313562345L-rhamnose-builds acid from
4313516813galactitol-builds acid from
4313517268myo-inositol-builds acid from
4313543943methyl alpha-D-mannoside-builds acid from
43135320061methyl alpha-D-glucopyranoside-builds acid from
4313528053melibiose-builds acid from
431356731melezitose-builds acid from
4313516634raffinose-builds acid from
4313528087glycogen-builds acid from
4313515443inulin-builds acid from
4313528017starch-builds acid from
4313517151xylitol-builds acid from
4313532528turanose-builds acid from
4313562318D-lyxose-builds acid from
4313528847D-fucose-builds acid from
4313518287L-fucose-builds acid from
4313518333D-arabitol-builds acid from
4313518403L-arabitol-builds acid from
4313524265gluconate-builds acid from
431352-oxogluconate-builds acid from
43135581435-dehydro-D-gluconate-builds acid from
431354853esculin+hydrolysis
43135606565hippurate+hydrolysis
4313516199urea+hydrolysis
4313529016arginine-hydrolysis
4313517306maltose+fermentation
4313529864mannitol+fermentation
4313527082trehalose+fermentation
4313517716lactose+fermentation
4313530911sorbitol+fermentation
4313515443inulin-fermentation
4313528053melibiose-fermentation
4313516634raffinose-fermentation

metabolite production

  • @ref: 43135
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: yes

metabolite tests

  • @ref: 43135
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
43135catalase-1.11.1.6
43135leucine arylamidase+3.4.11.1
43135naphthol-AS-BI-phosphohydrolase+
43135alpha-glucosidase+3.2.1.20
43135beta-glucosidase+3.2.1.21
43135alkaline phosphatase-3.1.3.1
43135esterase (C 4)-
43135esterase Lipase (C 8)-
43135lipase (C 14)-
43135valine arylamidase-
43135cystine arylamidase-3.4.11.3
43135trypsin-3.4.21.4
43135alpha-chymotrypsin-3.4.21.1
43135acid phosphatase-3.1.3.2
43135alpha-galactosidase-3.2.1.22
43135beta-galactosidase-3.2.1.23
43135beta-glucuronidase-3.2.1.31
43135N-acetyl-beta-glucosaminidase-3.2.1.52
43135alpha-mannosidase-3.2.1.24
43135beta-D-fucosidase-3.2.1.38

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    43135C16:032.09
    43135C18:1ω9c17.96
    43135C14:012.97
    43135C18:1ω7c / C18:1ω6c9.68
    43135C18:2ω6,9c / anteiso-C18:012.1
    43135C18:07.31
    43135C16:1ω9c4.1
    43135C16:1ω7c / C16:1ω6c2.01
    43135C17:01.07
    43135C12:00.7
  • type of FA analysis: whole cell analysis
  • incubation medium: TSA supplemented with 5 % sterile defibrinated sheep blood
  • agar/liquid: agar
  • incubation temperature: 37
  • incubation time: 1
  • system: MIS MIDI

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinentlatitudelongitudeisolation date
42837fresh faeces of a Tibetan antelope (Pantholops hodgsonii)Pantholops hodgsoniiQinghai, Hoh Xil Nat. Nature Reserve (35° 36' N 93° 44' E at an altitude of 4514.4 m )ChinaCHNAsia35.693.7333
43135fresh faecal samples of two Tibetan antelopesHoh Xil National Nature Reserve, Qinghai, ChinaChinaCHNAsia35932014-05-13

isolation source categories

Cat1Cat2Cat3
#Host#Mammals
#Host Body Product#Gastrointestinal tract#Feces (Stool)

taxonmaps

  • @ref: 69479
  • File name: preview.99_6989.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_4;96_3281;97_4023;98_5131;99_6989&stattab=map
  • Last taxonomy: Streptococcus pantholopis subclade
  • 16S sequence: KU877326
  • Sequence Identity:
  • Total samples: 12320
  • soil counts: 226
  • aquatic counts: 474
  • animal counts: 11468
  • plant counts: 152

Safety information

risk assessment

  • @ref: 42837
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 42837
  • description: Streptococcus pantholopis strain TA 26 16S ribosomal RNA gene, complete sequence
  • accession: KU877326
  • length: 1545
  • database: ena
  • NCBI tax ID: 1811193

GC content

@refGC-contentmethod
4313542
4283742sequence analysis

External links

@ref: 42837

culture collection no.: DSM 102135, CGMCC 1.15667

straininfo link

  • @ref: 96546
  • straininfo: 401483

literature

  • topic: Phylogeny
  • Pubmed-ID: 30785389
  • title: Streptococcus chenjunshii sp. nov. isolated from feces of Tibetan antelopes.
  • authors: Tian Z, Lu S, Jin D, Yang J, Pu J, Lai XH, Bai XN, Wu XM, Li J, Wang S, Xu J
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.003303
  • year: 2019
  • mesh: Animals, Antelopes/*microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/microbiology, Genes, Bacterial, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptococcus/*classification/isolation & purification, Tibet
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
42837Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102135Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102135)
43135Xiangning Bai, Yanwen Xiong, Shan Lu, Dong Jin, Xinhe Lai, Jing Yang, Lina Niu, Shoukui Hu, Xiangli Meng, Ji Pu, Changyun Ye and Jianguo XuStreptococcus pantholopis sp. nov., isolated from faeces of the Tibetan antelope (Pantholops hodgsonii)10.1099/ijsem.0.001189IJSEM 66: 3281-3286 201627226124
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
96546Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID401483.1