Strain identifier

BacDive ID: 140104

Type strain: Yes

Species: Chryseobacterium limigenitum

Strain Designation: SUR2

Strain history: CIP <- 2015, J. Trcek, Maribor Univ., Maribor, Slovenia: strain SUR2

NCBI tax ID(s): 1612149 (species)

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General

@ref: 42711

BacDive-ID: 140104

DSM-Number: 100052

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, rod-shaped

description: Chryseobacterium limigenitum SUR2 is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from dehydrated sludge of municipal sewage plant.

NCBI tax id

  • NCBI tax id: 1612149
  • Matching level: species

strain history

@refhistory
42711<- J. Trcek, University of Maribor, Faculty of Natural Sciences and Mathematics; SUR2 <- B. Skok
120601CIP <- 2015, J. Trcek, Maribor Univ., Maribor, Slovenia: strain SUR2

doi: 10.13145/bacdive140104.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Chryseobacterium
  • species: Chryseobacterium limigenitum
  • full scientific name: Chryseobacterium limigenitum Kämpfer et al. 2015

@ref: 42711

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Weeksellaceae

genus: Chryseobacterium

species: Chryseobacterium limigenitum

full scientific name: Chryseobacterium limigenitum Kämpfer et al. 2015

strain designation: SUR2

type strain: yes

Morphology

cell morphology

  • @ref: 120601
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
42033MEDIUM 29- Brain heart agaryesDistilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)
42711NUTRIENT AGAR (DSMZ Medium 1)yesName: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled waterhttps://mediadive.dsmz.de/medium/1
120601CIP Medium 29yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29

culture temp

@refgrowthtypetemperaturerange
42033positivegrowth30mesophilic
42711positivegrowth28mesophilic

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
42711dehydrated sludge of municipal sewage plantDogose near MariborSloveniaSVNEurope
120601Environment, Dehydrated sludge of municipal sewage plantDogose near Maribor, SloveniaSloveniaSVNEurope2014-05-29

isolation source categories

Cat1Cat2Cat3
#Engineered#Industrial#Plant (Factory)
#Engineered#Waste#Sewage sludge

taxonmaps

  • @ref: 69479
  • File name: preview.99_23485.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_76;96_206;97_2215;98_17691;99_23485&stattab=map
  • Last taxonomy: Chryseobacterium
  • 16S sequence: LN811705
  • Sequence Identity:
  • Total samples: 471
  • soil counts: 117
  • aquatic counts: 112
  • animal counts: 206
  • plant counts: 36

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
427111Risk group (German classification)
1206011Risk group (French classification)

Sequence information

16S sequences

  • @ref: 42711
  • description: Chryseobacterium limigenitum partial 16S rRNA gene, type strain SUR2T
  • accession: LN811705
  • length: 1417
  • database: ena
  • NCBI tax ID: 1612149

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Chryseobacterium limigenitum SUR2GCA_900114875contigncbi1612149
66792Chryseobacterium limigenitum DSM 1000522928239338draftimg1612149
66792Chryseobacterium limigenitum SUR22654587896draftimg1612149

External links

@ref: 42711

culture collection no.: DSM 100052, CCM 8594, CIP 110896, ZIM B1019

straininfo link

  • @ref: 96512
  • straininfo: 396429

literature

  • topic: Phylogeny
  • Pubmed-ID: 25812970
  • title: Chryseobacterium limigenitum sp. nov., isolated from dehydrated sludge.
  • authors: Kampfer P, Trcek J, Skok B, Sorgo A, Glaeser SP
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-015-0434-2
  • year: 2015
  • mesh: Bacterial Typing Techniques, Chryseobacterium/*classification/genetics/*isolation & purification/physiology, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Pigments, Biological/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiology
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
42033Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/34490
42711Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100052Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100052)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
96512Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID396429.1
120601Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110896Collection of Institut Pasteur (CIP 110896)