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Strain identifier

BacDive ID: 140103

Type strain: Yes

Species: Deinococcus carri

Strain Designation: MA1003

Strain history: <- KACC, Korean Agricultural Culture Collection, Nongsaengmyeong-ro,Iseo-myeon,Wanju-Gun,Jeollabuk-do, Republik Korea; KACC 17965 <- J.O. Ka, Seoul Natl. University; MA1003

NCBI tax ID(s): 1211323 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 42710

BacDive-ID: 140103

DSM-Number: 105435

keywords: 16S sequence, Bacteria, mesophilic

description: Deinococcus carri MA1003 is a mesophilic bacterium that was isolated from car, air-conditioning system .

NCBI tax id

  • NCBI tax id: 1211323
  • Matching level: species

strain history: <- KACC, Korean Agricultural Culture Collection, Nongsaengmyeong-ro,Iseo-myeon,Wanju-Gun,Jeollabuk-do, Republik Korea; KACC 17965 <- J.O. Ka, Seoul Natl. University; MA1003

doi: 10.13145/bacdive140103.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/deinococcota
  • domain: Bacteria
  • phylum: Deinococcota
  • class: Deinococci
  • order: Deinococcales
  • family: Deinococcaceae
  • genus: Deinococcus
  • species: Deinococcus carri
  • full scientific name: Deinococcus carri Kim et al. 2015

@ref: 42710

domain: Bacteria

phylum: Deinococcus-Thermus

class: Deinococci

order: Deinococcales

family: Deinococcaceae

genus: Deinococcus

species: Deinococcus carri

full scientific name: Deinococcus carri Kim et al. 2015

strain designation: MA1003

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
42710GLYCEROL-YEAST EXTRACT-PEPTONE MEDIUM (DSMZ Medium 1484)yeshttps://mediadive.dsmz.de/medium/1484Name: Glycerol-Yeast extract-Peptone Medium (DSMZ Medium 1484) Composition: Agar 15.0 g/l Yeast extract 5.0 g/l Bacto peptone 3.0 g/l Betaine 1.25 g/l Sodium pyruvate 1.25 g/l MgSO4 x 7 H2O 0.03 g/l Nitrilotriacetic acid 0.015 g/l NaCl 0.01 g/l MnSO4 x H2O 0.005 g/l ZnSO4 x 7 H2O 0.0018 g/l CoSO4 x 7 H2O 0.0018 g/l FeSO4 x 7 H2O 0.001 g/l CaCl2 x 2 H2O 0.001 g/l NiCl2 x 6 H2O 0.0003 g/l AlK(SO4)2 x 12 H2O 0.0002 g/l Pyridoxine hydrochloride 0.0001 g/l Na2MoO4 x 2 H2O 0.0001 g/l H3BO3 0.0001 g/l CuSO4 x 5 H2O 0.0001 g/l (DL)-alpha-Lipoic acid 5e-05 g/l p-Aminobenzoic acid 5e-05 g/l Calcium D-(+)-pantothenate 5e-05 g/l Nicotinic acid 5e-05 g/l Riboflavin 5e-05 g/l Thiamine HCl 5e-05 g/l Folic acid 2e-05 g/l Biotin 2e-05 g/l Na2WO4 x 2 H2O 4e-06 g/l Na2SeO3 x 5 H2O 3e-06 g/l Vitamin B12 1e-06 g/l Glycerol Distilled water
42710R2A MEDIUM (DSMZ Medium 830)yeshttps://mediadive.dsmz.de/medium/830Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

  • @ref: 42710
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 42710
  • sample type: car, air-conditioning system (biofilm of the evaporator core)
  • geographic location: Seoul
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Engineered#Industrial#Engineered product
#Environmental#Biofilm

taxonmaps

  • @ref: 69479
  • File name: preview.99_140347.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_90;96_53948;97_69582;98_93287;99_140347&stattab=map
  • Last taxonomy: Deinococcus carri subclade
  • 16S sequence: JX089327
  • Sequence Identity:
  • Total samples: 1361
  • soil counts: 140
  • aquatic counts: 481
  • animal counts: 555
  • plant counts: 185

Safety information

risk assessment

  • @ref: 42710
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 42710
  • description: Deinococcus carri strain MA1003 16S ribosomal RNA gene, partial sequence
  • accession: JX089327
  • length: 1442
  • database: ena
  • NCBI tax ID: 1211323

GC content

  • @ref: 42710
  • GC-content: 76.0

External links

@ref: 42710

culture collection no.: DSM 105435, KACC 17965, NBRC 110142

literature

  • topic: Phylogeny
  • Pubmed-ID: 26297510
  • title: Deinococcus metallilatus sp. nov. and Deinococcus carri sp. nov., isolated from a car air-conditioning system.
  • authors: Kim DU, Lee H, Lee JH, Ahn JH, Lim S, Jeong S, Park SY, Seong CN, Ka JO
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000396
  • year: 2015
  • mesh: Air Conditioning, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, *Deinococcus/classification, Fatty Acids/analysis, Genotype, Glycolipids/analysis, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ultraviolet Rays
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
42710Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-105435Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105435)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/