Strain identifier
BacDive ID: 140103
Type strain:
Species: Deinococcus carri
Strain Designation: MA1003
Strain history: <- KACC, Korean Agricultural Culture Collection, Nongsaengmyeong-ro,Iseo-myeon,Wanju-Gun,Jeollabuk-do, Republik Korea; KACC 17965 <- J.O. Ka, Seoul Natl. University; MA1003
NCBI tax ID(s): 1211323 (species)
General
@ref: 42710
BacDive-ID: 140103
DSM-Number: 105435
keywords: 16S sequence, Bacteria, mesophilic
description: Deinococcus carri MA1003 is a mesophilic bacterium that was isolated from car, air-conditioning system .
NCBI tax id
- NCBI tax id: 1211323
- Matching level: species
strain history
- @ref: 42710
- history: <- KACC, Korean Agricultural Culture Collection, Nongsaengmyeong-ro,Iseo-myeon,Wanju-Gun,Jeollabuk-do, Republik Korea; KACC 17965 <- J.O. Ka, Seoul Natl. University; MA1003
doi: 10.13145/bacdive140103.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/deinococcota
- domain: Bacteria
- phylum: Deinococcota
- class: Deinococci
- order: Deinococcales
- family: Deinococcaceae
- genus: Deinococcus
- species: Deinococcus carri
- full scientific name: Deinococcus carri Kim et al. 2015
@ref: 42710
domain: Bacteria
phylum: Deinococcus-Thermus
class: Deinococci
order: Deinococcales
family: Deinococcaceae
genus: Deinococcus
species: Deinococcus carri
full scientific name: Deinococcus carri Kim et al. 2015
strain designation: MA1003
type strain: yes
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
42710 | GLYCEROL-YEAST EXTRACT-PEPTONE MEDIUM (DSMZ Medium 1484) | yes | https://mediadive.dsmz.de/medium/1484 | Name: Glycerol-Yeast extract-Peptone Medium (DSMZ Medium 1484) Composition: Agar 15.0 g/l Yeast extract 5.0 g/l Bacto peptone 3.0 g/l Betaine 1.25 g/l Sodium pyruvate 1.25 g/l MgSO4 x 7 H2O 0.03 g/l Nitrilotriacetic acid 0.015 g/l NaCl 0.01 g/l MnSO4 x H2O 0.005 g/l ZnSO4 x 7 H2O 0.0018 g/l CoSO4 x 7 H2O 0.0018 g/l FeSO4 x 7 H2O 0.001 g/l CaCl2 x 2 H2O 0.001 g/l NiCl2 x 6 H2O 0.0003 g/l AlK(SO4)2 x 12 H2O 0.0002 g/l Pyridoxine hydrochloride 0.0001 g/l Na2MoO4 x 2 H2O 0.0001 g/l H3BO3 0.0001 g/l CuSO4 x 5 H2O 0.0001 g/l (DL)-alpha-Lipoic acid 5e-05 g/l p-Aminobenzoic acid 5e-05 g/l Calcium D-(+)-pantothenate 5e-05 g/l Nicotinic acid 5e-05 g/l Riboflavin 5e-05 g/l Thiamine HCl 5e-05 g/l Folic acid 2e-05 g/l Biotin 2e-05 g/l Na2WO4 x 2 H2O 4e-06 g/l Na2SeO3 x 5 H2O 3e-06 g/l Vitamin B12 1e-06 g/l Glycerol Distilled water |
42710 | R2A MEDIUM (DSMZ Medium 830) | yes | https://mediadive.dsmz.de/medium/830 | Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water |
culture temp
- @ref: 42710
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 42710
- sample type: car, air-conditioning system (biofilm of the evaporator core)
- geographic location: Seoul
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Industrial | #Engineered product |
#Environmental | #Biofilm |
taxonmaps
- @ref: 69479
- File name: preview.99_140347.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_90;96_53948;97_69582;98_93287;99_140347&stattab=map
- Last taxonomy: Deinococcus carri subclade
- 16S sequence: JX089327
- Sequence Identity:
- Total samples: 1361
- soil counts: 140
- aquatic counts: 481
- animal counts: 555
- plant counts: 185
Safety information
risk assessment
- @ref: 42710
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 42710
- description: Deinococcus carri strain MA1003 16S ribosomal RNA gene, partial sequence
- accession: JX089327
- length: 1442
- database: ena
- NCBI tax ID: 1211323
GC content
- @ref: 42710
- GC-content: 76.0
External links
@ref: 42710
culture collection no.: DSM 105435, KACC 17965, NBRC 110142
straininfo link
- @ref: 96511
- straininfo: 398094
literature
- topic: Phylogeny
- Pubmed-ID: 26297510
- title: Deinococcus metallilatus sp. nov. and Deinococcus carri sp. nov., isolated from a car air-conditioning system.
- authors: Kim DU, Lee H, Lee JH, Ahn JH, Lim S, Jeong S, Park SY, Seong CN, Ka JO
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.000396
- year: 2015
- mesh: Air Conditioning, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, *Deinococcus/classification, Fatty Acids/analysis, Genotype, Glycolipids/analysis, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ultraviolet Rays
- topic2: Genetics
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
42710 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-105435 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105435) | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
96511 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398094.1 |