Strain identifier
BacDive ID: 140102
Type strain: 
Species: Deinococcus metallilatus
Strain Designation: MA1002
Strain history: <- KACC, Korean Agricultural Culture Collection, Nongsaengmyeong-ro,Iseo-myeon,Wanju-Gun,Jeollabuk-do, Republik Korea; KACC 17964 <- J.O. Ka, Seoul; MA1002
NCBI tax ID(s): 1211322 (species)
version 8.1 (current version)
General
@ref: 42709
BacDive-ID: 140102
DSM-Number: 105434
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Deinococcus metallilatus MA1002 is a mesophilic bacterium that was isolated from car, air-conditioning system .
NCBI tax id
- NCBI tax id: 1211322
- Matching level: species
strain history
- @ref: 42709
- history: <- KACC, Korean Agricultural Culture Collection, Nongsaengmyeong-ro,Iseo-myeon,Wanju-Gun,Jeollabuk-do, Republik Korea; KACC 17964 <- J.O. Ka, Seoul; MA1002
doi: 10.13145/bacdive140102.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/deinococcota
- domain: Bacteria
- phylum: Deinococcota
- class: Deinococci
- order: Deinococcales
- family: Deinococcaceae
- genus: Deinococcus
- species: Deinococcus metallilatus
- full scientific name: Deinococcus metallilatus Kim et al. 2015
@ref: 42709
domain: Bacteria
phylum: Deinococcus-Thermus
class: Deinococci
order: Deinococcales
family: Deinococcaceae
genus: Deinococcus
species: Deinococcus metallilatus
full scientific name: Deinococcus metallilatus Kim et al. 2015
strain designation: MA1002
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 91.202 | |
| 69480 | 98.82 | positive |
Culture and growth conditions
culture medium
- @ref: 42709
- name: GLYCEROL-YEAST EXTRACT-PEPTONE MEDIUM (DSMZ Medium 1484)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1484
- composition: Name: Glycerol-Yeast extract-Peptone Medium (DSMZ Medium 1484) Composition: Agar 15.0 g/l Yeast extract 5.0 g/l Bacto peptone 3.0 g/l Betaine 1.25 g/l Sodium pyruvate 1.25 g/l MgSO4 x 7 H2O 0.03 g/l Nitrilotriacetic acid 0.015 g/l NaCl 0.01 g/l MnSO4 x H2O 0.005 g/l ZnSO4 x 7 H2O 0.0018 g/l CoSO4 x 7 H2O 0.0018 g/l FeSO4 x 7 H2O 0.001 g/l CaCl2 x 2 H2O 0.001 g/l NiCl2 x 6 H2O 0.0003 g/l AlK(SO4)2 x 12 H2O 0.0002 g/l Pyridoxine hydrochloride 0.0001 g/l Na2MoO4 x 2 H2O 0.0001 g/l H3BO3 0.0001 g/l CuSO4 x 5 H2O 0.0001 g/l (DL)-alpha-Lipoic acid 5e-05 g/l p-Aminobenzoic acid 5e-05 g/l Calcium D-(+)-pantothenate 5e-05 g/l Nicotinic acid 5e-05 g/l Riboflavin 5e-05 g/l Thiamine HCl 5e-05 g/l Folic acid 2e-05 g/l Biotin 2e-05 g/l Na2WO4 x 2 H2O 4e-06 g/l Na2SeO3 x 5 H2O 3e-06 g/l Vitamin B12 1e-06 g/l Glycerol Distilled water
culture temp
- @ref: 42709
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.803
Isolation, sampling and environmental information
isolation
- @ref: 42709
- sample type: car, air-conditioning system (biofilm of the evaporator core)
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Industrial | #Engineered product |
| #Environmental | #Biofilm |
taxonmaps
- @ref: 69479
- File name: preview.99_140349.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15362;96_53758;97_69584;98_93289;99_140349&stattab=map
- Last taxonomy: Deinococcus metallilatus subclade
- 16S sequence: JX089329
- Sequence Identity:
- Total samples: 45
- soil counts: 4
- aquatic counts: 7
- animal counts: 18
- plant counts: 16
Safety information
risk assessment
- @ref: 42709
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 42709
- description: Deinococcus metallilatus strain MA1002 16S ribosomal RNA gene, partial sequence
- accession: JX089329
- length: 1444
- database: ena
- NCBI tax ID: 1211322
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Deinococcus metallilatus MA1002 | GCA_004758605 | chromosome | ncbi | 1211322 |
| 66792 | Deinococcus metallilatus DSM 105434 | GCA_014202095 | contig | ncbi | 1211322 |
| 66792 | Deinococcus metallilatus MA1002 | GCA_004115945 | contig | ncbi | 1211322 |
| 66792 | Deinococcus metallilatus strain DSM 105434 | 1211322.6 | wgs | patric | 1211322 |
| 66792 | Deinococcus metallilatus MA1002 | 2895824695 | draft | img | 1211322 |
| 66792 | Deinococcus metallilatus DSM 105434 | 2861326389 | draft | img | 1211322 |
GC content
- @ref: 42709
- GC-content: 70.5
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 72 | no |
| motile | no | 87.28 | no |
| flagellated | no | 96.819 | no |
| gram-positive | yes | 74.138 | no |
| anaerobic | no | 98.718 | no |
| aerobic | yes | 89.827 | no |
| halophile | no | 93.098 | no |
| spore-forming | no | 87.138 | no |
| thermophile | no | 71.237 | yes |
| glucose-util | yes | 82.553 | no |
| glucose-ferment | no | 90.653 | no |
External links
@ref: 42709
culture collection no.: DSM 105434, KACC 17964, NBRC 11041
straininfo link
- @ref: 96510
- straininfo: 398451
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 26297510 | Deinococcus metallilatus sp. nov. and Deinococcus carri sp. nov., isolated from a car air-conditioning system. | Kim DU, Lee H, Lee JH, Ahn JH, Lim S, Jeong S, Park SY, Seong CN, Ka JO | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000396 | 2015 | Air Conditioning, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, *Deinococcus/classification, Fatty Acids/analysis, Genotype, Glycolipids/analysis, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ultraviolet Rays | Genetics |
| Phylogeny | 29458466 | Deinococcus aluminii sp. nov., isolated from an automobile air conditioning system. | Kim DU, Lee H, Lee S, Park S, Yoon JH, Zhao L, Kim MK, Ahn JH, Ka JO | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002574 | 2018 | ||
| Transcriptome | 33147125 | Comparative genomics of wild-type and laboratory-evolved biofilm-overproducing Deinococcus metallilatus strains. | Park C, Shin B, Kim W, Cheong H, Park S, Park W | Microb Genom | 10.1099/mgen.0.000464 | 2020 | Acetates/chemistry, Bacterial Proteins/*genetics/radiation effects, Biofilms/*growth & development/radiation effects, Culture Media/chemistry, Deinococcus/genetics/*growth & development/radiation effects, Directed Molecular Evolution, Gene Expression Profiling, Gene Expression Regulation, Bacterial/radiation effects, Genomics/*methods, Glucose/chemistry, Glyoxylates/chemistry, Microbial Viability, *Mutation, Sequence Analysis, DNA, Sequence Analysis, RNA, Whole Genome Sequencing | Genetics |
| Biotechnology | 34118245 | Killing effect of deinoxanthins on cyanobloom-forming Microcystis aeruginosa: Eco-friendly production and specific activity of deinoxanthins. | Kim W, Kim M, Hong M, Park W | Environ Res | 10.1016/j.envres.2021.111455 | 2021 | Carotenoids, Cyanobacteria, Deinococcus, Hydrogen Peroxide, *Microcystis |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 42709 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-105434 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105434) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 96510 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398451.1 |