Strain identifier
BacDive ID: 140069
Type strain: 
Species: Microbacterium jejuense
Strain Designation: THG-C31
Strain history: T.-H. Yi THG-C31.
NCBI tax ID(s): 1263637 (species)
version 8.1 (current version)
General
@ref: 42676
BacDive-ID: 140069
DSM-Number: 105370
keywords: 16S sequence, Bacteria, mesophilic
description: Microbacterium jejuense THG-C31 is a mesophilic bacterium that was isolated from salty soil of pine grove.
NCBI tax id
- NCBI tax id: 1263637
- Matching level: species
strain history
| @ref | history |
|---|---|
| 42676 | <- KACC, Korean Agricultural Culture Collection, Nongsaengmyeong-ro,Iseo-myeon,Wanju_Gun,Jeollabuk-do, Republik of Korea; KACC 17123 <- T.H. Yi, Kyung Hee University; THG-C31 |
| 67770 | T.-H. Yi THG-C31. |
doi: 10.13145/bacdive140069.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Microbacteriaceae
- genus: Microbacterium
- species: Microbacterium jejuense
- full scientific name: Microbacterium jejuense Kook et al. 2014
@ref: 42676
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Microbacteriaceae
genus: Microbacterium
species: Microbacterium jejuense
full scientific name: Microbacterium jejuense Kook et al. 2014
strain designation: THG-C31
type strain: yes
Culture and growth conditions
culture medium
- @ref: 42676
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 42676 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-12, MK-13
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 42676 | salty soil of pine grove | Jeju island | Republic of Korea | KOR | Asia |
| 67770 | Salty soil |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Condition | #Saline | |
| #Engineered | #Agriculture | #Grove (Orchard) |
| #Environmental | #Terrestrial | #Soil |
| #Host | #Plants | #Tree |
taxonmaps
- @ref: 69479
- File name: preview.99_7457.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_137;97_246;98_275;99_7457&stattab=map
- Last taxonomy: Microbacterium
- 16S sequence: JX997974
- Sequence Identity:
- Total samples: 337
- soil counts: 125
- aquatic counts: 21
- animal counts: 83
- plant counts: 108
Safety information
risk assessment
- @ref: 42676
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 42676
- description: Microbacterium jejuense strain THG-C31 16S ribosomal RNA gene, partial sequence
- accession: JX997974
- length: 1441
- database: ena
- NCBI tax ID: 1263637
GC content
- @ref: 42676
- GC-content: 75.6
External links
@ref: 42676
culture collection no.: DSM 105370, JCM 18734, KACC 17123
straininfo link
- @ref: 96483
- straininfo: 398720
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24729394 | Microbacterium kyungheense sp. nov. and Microbacterium jejuense sp. nov., isolated from salty soil. | Kook M, Son HM, Yi TH | Int J Syst Evol Microbiol | 10.1099/ijs.0.054973-0 | 2014 | Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Glycolipids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Ornithine/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Spermidine/chemistry, Vitamin K 2/chemistry | Genetics |
| Phylogeny | 33860851 | Microbacterium helvum sp. nov., a novel actinobacterium isolated from cow dung. | Li X, Zhang L, Huang F, Zhao J, Wang H, Jiao Y, Qian L, Wang X, Xiang W | Arch Microbiol | 10.1007/s00203-021-02311-9 | 2021 | Amino Acids/analysis, Animals, Base Composition, Cattle, DNA, Bacterial/chemistry, Fatty Acids/chemistry, Feces/microbiology, Female, Lipids/analysis, Microbacterium/chemistry/classification/genetics/*isolation & purification, Phylogeny, Sugars/analysis | Enzymology |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 42676 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-105370 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105370) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 96483 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398720.1 |