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Strain identifier

BacDive ID: 140045

Type strain: Yes

Species: Peribacillus deserti

Strain Designation: ZLD-8

Strain history: <- L Zhang, CCTCC, China

NCBI tax ID(s): 673318 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 42652

BacDive-ID: 140045

DSM-Number: 105482

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, motile, rod-shaped

description: Peribacillus deserti ZLD-8 is an aerobe, spore-forming, mesophilic bacterium that was isolated from From surface layer of a desert soil.

NCBI tax id

  • NCBI tax id: 673318
  • Matching level: species

strain history

doi: 10.13145/bacdive140045.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Peribacillus
  • species: Peribacillus deserti
  • full scientific name: Peribacillus deserti (Zhang et al. 2012) Patel and Gupta 2020
  • synonyms

    • @ref: 20215
    • synonym: Bacillus deserti

@ref: 42652

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Peribacillus

species: Peribacillus deserti

full scientific name: Peribacillus deserti (Zhang et al. 2012) Patel and Gupta 2020

strain designation: ZLD-8

type strain: yes

Morphology

cell morphology

@refcell shapemotilitygram stainconfidence
67771rod-shapedyes
67771positive
69480yes84.162
69480positive95.629

Culture and growth conditions

culture medium

  • @ref: 42652
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
42652positivegrowth30mesophilic
67771positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

spore formation

@reftype of sporespore formationconfidence
67771sporeyes
69480yes95.247

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 43.123

observation

  • @ref: 67771
  • observation: quinones: MK-7

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
67771From surface layer of a desert soilXinjiang ProvinceChinaCHNAsia
42652desert soilXinjiang provinceChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Desert
#Environmental#Terrestrial#Soil
#Condition#Xerophilic

taxonmaps

  • @ref: 69479
  • File name: preview.99_11553.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_5818;97_6998;98_8655;99_11553&stattab=map
  • Last taxonomy: Peribacillus deserti
  • 16S sequence: GQ465041
  • Sequence Identity:
  • Total samples: 1502
  • soil counts: 1167
  • aquatic counts: 170
  • animal counts: 121
  • plant counts: 44

Safety information

risk assessment

  • @ref: 42652
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 42652
  • description: Bacillus deserti strain ZLD-8 16S ribosomal RNA gene, partial sequence
  • accession: GQ465041
  • length: 1481
  • database: ena
  • NCBI tax ID: 673318

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Peribacillus deserti DSM 105482GCA_016909175contigncbi673318
66792Peribacillus deserti strain DSM 105482673318.5wgspatric673318
66792Peribacillus deserti DSM 1054822901288096draftimg673318
66792Escherichia coli AR_0450GCA_003324445contigpatric562

GC content

  • @ref: 67771
  • GC-content: 40.1

External links

@ref: 42652

culture collection no.: DSM 105482, CCTCC AB 207173, KCTC 13246

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny20582469Bacillus deserti sp. nov., a novel bacterium isolated from the desert of Xinjiang, China.Zhang L, Wu GL, Wang Y, Dai J, Fang CXAntonie Van Leeuwenhoek10.1007/s10482-010-9479-42010Bacillus/chemistry/*classification/genetics/*isolation & purification, Base Composition, Cell Wall/chemistry, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Desert Climate, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, TemperatureGenetics
Phylogeny26612584Bacillus cavernae sp. nov. isolated from cave soil.Feng L, Liu D, Sun X, Wang G, Li MInt J Syst Evol Microbiol10.1099/ijsem.0.0007942015

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
42652Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-105482Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105482)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes