Strain identifier
BacDive ID: 140045
Type strain: 
Species: Peribacillus deserti
Strain Designation: ZLD-8
Strain history: <- L Zhang, CCTCC, China
NCBI tax ID(s): 673318 (species)
version 9.3 (current version)
General
@ref: 42652
BacDive-ID: 140045
DSM-Number: 105482
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, motile, rod-shaped
description: Peribacillus deserti ZLD-8 is an aerobe, spore-forming, mesophilic bacterium that was isolated from From surface layer of a desert soil.
NCBI tax id
- NCBI tax id: 673318
- Matching level: species
strain history
| @ref | history |
|---|---|
| 42652 | <- Korean Collection for Type Cultures, Biological Resources Center, Korea Institute of Bioscience and Biotechnology (KRIBB); KCTC 13246 |
| 67771 | <- L Zhang, CCTCC, China |
doi: 10.13145/bacdive140045.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Peribacillus
- species: Peribacillus deserti
- full scientific name: Peribacillus deserti (Zhang et al. 2012) Patel and Gupta 2020
synonyms
- @ref: 20215
- synonym: Bacillus deserti
@ref: 42652
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Peribacillus
species: Peribacillus deserti
full scientific name: Peribacillus deserti (Zhang et al. 2012) Patel and Gupta 2020
strain designation: ZLD-8
type strain: yes
Morphology
cell morphology
| @ref | cell shape | motility | gram stain |
|---|---|---|---|
| 67771 | rod-shaped | yes | |
| 67771 | positive |
Culture and growth conditions
culture medium
- @ref: 42652
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 42652 | positive | growth | 30 |
| 67771 | positive | growth | 30 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 67771 | aerobe | |
| 125439 | obligate aerobe | 96.5 |
spore formation
| @ref | type of spore | spore formation | confidence |
|---|---|---|---|
| 67771 | spore | yes | |
| 125438 | yes | 90.415 |
observation
- @ref: 67771
- observation: quinones: MK-7
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 67771 | From surface layer of a desert soil | Xinjiang Province | China | CHN | Asia |
| 42652 | desert soil | Xinjiang province | China | CHN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Desert |
| #Environmental | #Terrestrial | #Soil |
| #Condition | #Xerophilic |
taxonmaps
- @ref: 69479
- File name: preview.99_11553.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_5818;97_6998;98_8655;99_11553&stattab=map
- Last taxonomy: Peribacillus deserti
- 16S sequence: GQ465041
- Sequence Identity:
- Total samples: 1502
- soil counts: 1167
- aquatic counts: 170
- animal counts: 121
- plant counts: 44
Safety information
risk assessment
- @ref: 42652
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 42652
- description: Bacillus deserti strain ZLD-8 16S ribosomal RNA gene, partial sequence
- accession: GQ465041
- length: 1481
- database: nuccore
- NCBI tax ID: 673318
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Peribacillus deserti DSM 105482 | GCA_016909175 | contig | ncbi | 673318 |
| 66792 | Peribacillus deserti strain DSM 105482 | 673318.5 | wgs | patric | 673318 |
| 66792 | Peribacillus deserti DSM 105482 | 2901288096 | draft | img | 673318 |
GC content
- @ref: 67771
- GC-content: 40.1
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 79.397 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 96.19 | yes |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 90.415 | yes |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 76.911 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 91.141 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 86.708 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 88.2 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 84.2 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | variable | 84.5 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 96.5 |
External links
@ref: 42652
culture collection no.: DSM 105482, CCTCC AB 207173, KCTC 13246
straininfo link
- @ref: 96465
- straininfo: 397543
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 20582469 | Bacillus deserti sp. nov., a novel bacterium isolated from the desert of Xinjiang, China. | Zhang L, Wu GL, Wang Y, Dai J, Fang CX | Antonie Van Leeuwenhoek | 10.1007/s10482-010-9479-4 | 2010 | Bacillus/chemistry/*classification/genetics/*isolation & purification, Base Composition, Cell Wall/chemistry, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Desert Climate, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Hydrogen-Ion Concentration, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, Temperature | Genetics |
| Phylogeny | 26612584 | Bacillus cavernae sp. nov. isolated from cave soil. | Feng L, Liu D, Sun X, Wang G, Li M | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000794 | 2015 |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 42652 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-105482 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105482) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 96465 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID397543.1 | |||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |||
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |