Strain identifier
BacDive ID: 140044
Type strain:
Species: Methanobacterium lacus
Strain Designation: AL21
Strain history: <- H. Cadillo-Quiroz, School of Life Sciences, Arizona State University, USA (Methanobacterium boreale) <- H. Cadillo-Quiroz, Dept. Microbiology, Cornell Univ., Ithaca, USA {2008}
NCBI tax ID(s): 877455 (species)
General
@ref: 42651
BacDive-ID: 140044
DSM-Number: 25616
keywords: Archaea, mesophilic
description: Methanobacterium lacus AL21 is a mesophilic archaeon that was isolated from peat soil from an acidic poor fen.
NCBI tax id
- NCBI tax id: 877455
- Matching level: species
strain history
- @ref: 42651
- history: <- H. Cadillo-Quiroz, School of Life Sciences, Arizona State University, USA (Methanobacterium boreale) <- H. Cadillo-Quiroz, Dept. Microbiology, Cornell Univ., Ithaca, USA {2008}
doi: 10.13145/bacdive140044.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Methanobacteria
- order: Methanobacteriales
- family: Methanobacteriaceae
- genus: Methanobacterium
- species: Methanobacterium lacus
- full scientific name: Methanobacterium lacus Borrel et al. 2012
@ref: 42651
domain: Archaea
phylum: Euryarchaeota
class: Methanobacteria
order: Methanobacteriales
family: Methanobacteriaceae
genus: Methanobacterium
species: Methanobacterium lacus
full scientific name: Methanobacterium lacus Borrel et al. 2012
strain designation: AL21
type strain: no
Culture and growth conditions
culture medium
- @ref: 42651
- name: METHANOSPHAERULA (PEAT) MEDIUM (DSMZ Medium 1094)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1094
- composition: Name: METHANOSPHAERULA (PEAT) MEDIUM (DSMZ Medium 1094; with strain-specific modifications) Composition: 2-(N-Morpholino)ethanesulfonic acid 1.93644 g/l Na-acetate 0.40715 g/l NaOH 0.19861 g/l TiCl3 0.0819265 g/l 2-Mercaptoethanesulfonic acid 0.0794439 g/l Na2-EDTA 0.0369712 g/l NH4Cl 0.0266137 g/l Yeast extract 0.019861 g/l KH2PO4 0.0135055 g/l Na2S x 9 H2O 0.00953327 g/l AlK(SO4)2 x 12 H2O 0.00342602 g/l CaCl2 x 2 H2O 0.00232373 g/l MgSO4 x 7 H2O 0.00154916 g/l KCl 0.00148957 g/l FeCl2 x 4 H2O 0.00133069 g/l Pyridoxine hydrochloride 9.93049e-05 g/l ZnCl2 7.44787e-05 g/l p-Aminobenzoic acid 4.96524e-05 g/l Nicotinic acid 4.96524e-05 g/l Riboflavin 4.96524e-05 g/l Thiamine HCl 4.96524e-05 g/l (DL)-alpha-Lipoic acid 4.96524e-05 g/l Calcium D-(+)-pantothenate 4.96524e-05 g/l MnSO4 x 4 H2O 2.58193e-05 g/l CoCl2 x 6 H2O 2.38332e-05 g/l NiCl2 x 6 H2O 2.38332e-05 g/l Na2Mo4 x 2 H2O 2.38332e-05 g/l Folic acid 1.9861e-05 g/l Biotin 1.9861e-05 g/l H3BO3 1.88679e-05 g/l CuSO4 x 5 H2O 8.93744e-06 g/l Vitamin B12 9.93049e-07 g/l Na3-NTA x H2O Tris-HCl buffer Distilled water
culture temp
- @ref: 42651
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 42651
- sample type: peat soil from an acidic poor fen
- geographic location: Alaska, Baxter fen near Anchorage
- country: USA
- origin.country: USA
- continent: North America
- latitude: 61.5333
- longitude: -150.45
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Condition | #Acidic | |
#Environmental | #Terrestrial | #Soil |
#Environmental | #Terrestrial | #Wetland (Swamp) |
Safety information
risk assessment
- @ref: 42651
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
GC content
- @ref: 42651
- GC-content: 35.8
- method: sequence analysis
External links
@ref: 42651
culture collection no.: DSM 25616
straininfo link
- @ref: 96464
- straininfo: 405963
Reference
@id | authors | title | doi/url | catalogue | journal | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
42651 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25616 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25616) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
96464 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID405963.1 |