Strain identifier

BacDive ID: 140044

Type strain: No

Species: Methanobacterium lacus

Strain Designation: AL21

Strain history: <- H. Cadillo-Quiroz, School of Life Sciences, Arizona State University, USA (Methanobacterium boreale) <- H. Cadillo-Quiroz, Dept. Microbiology, Cornell Univ., Ithaca, USA {2008}

NCBI tax ID(s): 877455 (species)

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General

@ref: 42651

BacDive-ID: 140044

DSM-Number: 25616

keywords: Archaea, mesophilic

description: Methanobacterium lacus AL21 is a mesophilic archaeon that was isolated from peat soil from an acidic poor fen.

NCBI tax id

  • NCBI tax id: 877455
  • Matching level: species

strain history

  • @ref: 42651
  • history: <- H. Cadillo-Quiroz, School of Life Sciences, Arizona State University, USA (Methanobacterium boreale) <- H. Cadillo-Quiroz, Dept. Microbiology, Cornell Univ., Ithaca, USA {2008}

doi: 10.13145/bacdive140044.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/methanobacteriota
  • domain: Archaea
  • phylum: Methanobacteriota
  • class: Methanobacteria
  • order: Methanobacteriales
  • family: Methanobacteriaceae
  • genus: Methanobacterium
  • species: Methanobacterium lacus
  • full scientific name: Methanobacterium lacus Borrel et al. 2012

@ref: 42651

domain: Archaea

phylum: Euryarchaeota

class: Methanobacteria

order: Methanobacteriales

family: Methanobacteriaceae

genus: Methanobacterium

species: Methanobacterium lacus

full scientific name: Methanobacterium lacus Borrel et al. 2012

strain designation: AL21

type strain: no

Culture and growth conditions

culture medium

  • @ref: 42651
  • name: METHANOSPHAERULA (PEAT) MEDIUM (DSMZ Medium 1094)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1094
  • composition: Name: METHANOSPHAERULA (PEAT) MEDIUM (DSMZ Medium 1094; with strain-specific modifications) Composition: 2-(N-Morpholino)ethanesulfonic acid 1.93644 g/l Na-acetate 0.40715 g/l NaOH 0.19861 g/l TiCl3 0.0819265 g/l 2-Mercaptoethanesulfonic acid 0.0794439 g/l Na2-EDTA 0.0369712 g/l NH4Cl 0.0266137 g/l Yeast extract 0.019861 g/l KH2PO4 0.0135055 g/l Na2S x 9 H2O 0.00953327 g/l AlK(SO4)2 x 12 H2O 0.00342602 g/l CaCl2 x 2 H2O 0.00232373 g/l MgSO4 x 7 H2O 0.00154916 g/l KCl 0.00148957 g/l FeCl2 x 4 H2O 0.00133069 g/l Pyridoxine hydrochloride 9.93049e-05 g/l ZnCl2 7.44787e-05 g/l p-Aminobenzoic acid 4.96524e-05 g/l Nicotinic acid 4.96524e-05 g/l Riboflavin 4.96524e-05 g/l Thiamine HCl 4.96524e-05 g/l (DL)-alpha-Lipoic acid 4.96524e-05 g/l Calcium D-(+)-pantothenate 4.96524e-05 g/l MnSO4 x 4 H2O 2.58193e-05 g/l CoCl2 x 6 H2O 2.38332e-05 g/l NiCl2 x 6 H2O 2.38332e-05 g/l Na2Mo4 x 2 H2O 2.38332e-05 g/l Folic acid 1.9861e-05 g/l Biotin 1.9861e-05 g/l H3BO3 1.88679e-05 g/l CuSO4 x 5 H2O 8.93744e-06 g/l Vitamin B12 9.93049e-07 g/l Na3-NTA x H2O Tris-HCl buffer Distilled water

culture temp

  • @ref: 42651
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 42651
  • sample type: peat soil from an acidic poor fen
  • geographic location: Alaska, Baxter fen near Anchorage
  • country: USA
  • origin.country: USA
  • continent: North America
  • latitude: 61.5333
  • longitude: -150.45

isolation source categories

Cat1Cat2Cat3
#Condition#Acidic
#Environmental#Terrestrial#Soil
#Environmental#Terrestrial#Wetland (Swamp)

Safety information

risk assessment

  • @ref: 42651
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

GC content

  • @ref: 42651
  • GC-content: 35.8
  • method: sequence analysis

External links

@ref: 42651

culture collection no.: DSM 25616

straininfo link

  • @ref: 96464
  • straininfo: 405963

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
42651Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-25616Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25616)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
96464Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405963.1