Strain identifier
BacDive ID: 13996
Type strain:
Species: Azospirillum doebereinerae
Strain history: <- B. Eckert and A. Hartmann; GSF71
NCBI tax ID(s): 92933 (species)
General
@ref: 4917
BacDive-ID: 13996
DSM-Number: 13131
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Azospirillum doebereinerae DSM 13131 is a mesophilic bacterium that was isolated from Miscanthus sinensis cv. giganteus, washed roots.
NCBI tax id
- NCBI tax id: 92933
- Matching level: species
strain history
- @ref: 4917
- history: <- B. Eckert and A. Hartmann; GSF71
doi: 10.13145/bacdive13996.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Azospirillaceae
- genus: Azospirillum
- species: Azospirillum doebereinerae
- full scientific name: Azospirillum doebereinerae Eckert et al. 2001
@ref: 4917
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodospirillales
family: Azospirillaceae
genus: Azospirillum
species: Azospirillum doebereinerae
full scientific name: Azospirillum doebereinerae Eckert et al. 2001
type strain: yes
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
4917 | HETEROTROPHIC MEDIUM H3P (DSMZ Medium 428) | yes | https://mediadive.dsmz.de/medium/428 | Name: HETEROTROPHIC MEDIUM H3P (DSMZ Medium 428) Composition: Agar 19.802 g/l Na2HPO4 x 2 H2O 2.87129 g/l KH2PO4 2.27723 g/l D-Glucose 1.9802 g/l Na-lactate 0.990099 g/l Na-pyruvate 0.990099 g/l D-Mannitol 0.990099 g/l DL-Malate 0.990098 g/l Na-acetate 0.990098 g/l Yeast extract 0.990098 g/l NH4Cl 0.990098 g/l Disodium succinate 0.990098 g/l MgSO4 x 7 H2O 0.495049 g/l Ferric ammonium citrate 0.049505 g/l CaCl2 x 2 H2O 0.00990098 g/l NaVO3 x H2O 0.00495049 g/l Thiamine-HCl x 2 H2O 0.00247525 g/l Nicotinic acid 0.00247525 g/l Pyridoxine hydrochloride 0.00247525 g/l Calcium pantothenate 0.00247525 g/l H3BO3 0.00148515 g/l CoCl2 x 6 H2O 0.000990099 g/l Riboflavin 0.00049505 g/l ZnSO4 x 7 H2O 0.00049505 g/l MnCl2 x 4 H2O 0.000148515 g/l Na2MoO4 x 2 H2O 0.000148515 g/l NiCl2 x 6 H2O 9.90099e-05 g/l CuCl2 x 2 H2O 4.95049e-05 g/l Vitamin B12 4.95049e-05 g/l Folic acid 9.90099e-06 g/l Biotin 4.9505e-06 g/l Distilled water |
4917 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
culture temp
- @ref: 4917
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 4917
- sample type: Miscanthus sinensis cv. giganteus, washed roots
- host species: Miscanthus sinensis
- geographic location: Freising
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Plants | #Herbaceous plants (Grass,Crops) |
#Host Body-Site | #Plant | #Root (Rhizome) |
Safety information
risk assessment
- @ref: 4917
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Azospirillum doebereinerae 16S rRNA gene
- accession: AJ238567
- length: 1303
- database: ena
- NCBI tax ID: 92933
Genome sequences
- @ref: 66792
- description: Azospirillum doebereinerae DSM 13131
- accession: 2828314363
- assembly level: draft
- database: img
- NCBI tax ID: 92933
External links
@ref: 4917
culture collection no.: DSM 13131, GSF 71
straininfo link
- @ref: 83167
- straininfo: 49413
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 11211255 | Azospirillum doebereinerae sp. nov., a nitrogen-fixing bacterium associated with the C4-grass Miscanthus. | Eckert B, Weber OB, Kirchhof G, Halbritter A, Stoffels M, Hartmann A | Int J Syst Evol Microbiol | 10.1099/00207713-51-1-17 | 2001 | Azospirillum/*classification/genetics/isolation & purification/physiology, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, In Situ Hybridization, Fluorescence, Molecular Sequence Data, *Nitrogen Fixation/genetics, Oligonucleotide Probes, Phenotype, Phylogeny, Plant Roots/microbiology, Poaceae/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Genetics |
Phylogeny | 20081019 | Azospirillum thiophilum sp. nov., a diazotrophic bacterium isolated from a sulfide spring. | Lavrinenko K, Chernousova E, Gridneva E, Dubinina G, Akimov V, Kuever J, Lysenko A, Grabovich M | Int J Syst Evol Microbiol | 10.1099/ijs.0.018853-0 | 2010 | Azospirillum/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Russia, Sequence Analysis, DNA, Sulfides, Ubiquinone/chemistry, *Water Microbiology | Genetics |
31054383 | Structure of the O-specific polysaccharide of Azospirillum doebereinerae type strain GSF71(T). | Sigida EN, Fedonenko YP, Shashkov AS, Zdorovenko EL, Konnova SA, Knirel YA | Carbohydr Res | 10.1016/j.carres.2019.04.009 | 2019 | Azospirillum/*chemistry, Carbohydrate Conformation, Hydrolysis, Magnetic Resonance Spectroscopy, Polysaccharides/*chemistry | ||
Phylogeny | 31135333 | Azospirillum griseum sp. nov., isolated from lakewater. | Yang Y, Zhang R, Feng J, Wang C, Chen J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003460 | 2019 | Azospirillum/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Lakes/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/chemistry | Transcriptome |
Phylogeny | 31651377 | Azospirillum thermophilum sp. nov., isolated from a hot spring. | Zhao ZL, Ming H, Ding CL, Ji WL, Cheng LJ, Niu MM, Zhang YM, Zhang LY, Meng XL, Nie GX | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003788 | 2020 | Azospirillum/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Hot Springs/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/analogs & derivatives/chemistry | Transcriptome |
32733613 | Synthesis of the tetrasaccharide repeating unit of the O-specific polysaccharide of Azospirillum doebereinerae type strain GSF71(T) using linear and one-pot iterative glycosylations. | Gucchait A, Shit P, Misra AK | Beilstein J Org Chem | 10.3762/bjoc.16.141 | 2020 |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
4917 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13131) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-13131 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
83167 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49413.1 | StrainInfo: A central database for resolving microbial strain identifiers |