Strain identifier

BacDive ID: 13996

Type strain: Yes

Species: Azospirillum doebereinerae

Strain history: <- B. Eckert and A. Hartmann; GSF71

NCBI tax ID(s): 92933 (species)

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General

@ref: 4917

BacDive-ID: 13996

DSM-Number: 13131

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Azospirillum doebereinerae DSM 13131 is a mesophilic bacterium that was isolated from Miscanthus sinensis cv. giganteus, washed roots.

NCBI tax id

  • NCBI tax id: 92933
  • Matching level: species

strain history

  • @ref: 4917
  • history: <- B. Eckert and A. Hartmann; GSF71

doi: 10.13145/bacdive13996.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Azospirillaceae
  • genus: Azospirillum
  • species: Azospirillum doebereinerae
  • full scientific name: Azospirillum doebereinerae Eckert et al. 2001

@ref: 4917

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodospirillales

family: Azospirillaceae

genus: Azospirillum

species: Azospirillum doebereinerae

full scientific name: Azospirillum doebereinerae Eckert et al. 2001

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4917HETEROTROPHIC MEDIUM H3P (DSMZ Medium 428)yeshttps://mediadive.dsmz.de/medium/428Name: HETEROTROPHIC MEDIUM H3P (DSMZ Medium 428) Composition: Agar 19.802 g/l Na2HPO4 x 2 H2O 2.87129 g/l KH2PO4 2.27723 g/l D-Glucose 1.9802 g/l Na-lactate 0.990099 g/l Na-pyruvate 0.990099 g/l D-Mannitol 0.990099 g/l DL-Malate 0.990098 g/l Na-acetate 0.990098 g/l Yeast extract 0.990098 g/l NH4Cl 0.990098 g/l Disodium succinate 0.990098 g/l MgSO4 x 7 H2O 0.495049 g/l Ferric ammonium citrate 0.049505 g/l CaCl2 x 2 H2O 0.00990098 g/l NaVO3 x H2O 0.00495049 g/l Thiamine-HCl x 2 H2O 0.00247525 g/l Nicotinic acid 0.00247525 g/l Pyridoxine hydrochloride 0.00247525 g/l Calcium pantothenate 0.00247525 g/l H3BO3 0.00148515 g/l CoCl2 x 6 H2O 0.000990099 g/l Riboflavin 0.00049505 g/l ZnSO4 x 7 H2O 0.00049505 g/l MnCl2 x 4 H2O 0.000148515 g/l Na2MoO4 x 2 H2O 0.000148515 g/l NiCl2 x 6 H2O 9.90099e-05 g/l CuCl2 x 2 H2O 4.95049e-05 g/l Vitamin B12 4.95049e-05 g/l Folic acid 9.90099e-06 g/l Biotin 4.9505e-06 g/l Distilled water
4917NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 4917
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 4917
  • sample type: Miscanthus sinensis cv. giganteus, washed roots
  • host species: Miscanthus sinensis
  • geographic location: Freising
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Root (Rhizome)

Safety information

risk assessment

  • @ref: 4917
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Azospirillum doebereinerae 16S rRNA gene
  • accession: AJ238567
  • length: 1303
  • database: ena
  • NCBI tax ID: 92933

Genome sequences

  • @ref: 66792
  • description: Azospirillum doebereinerae DSM 13131
  • accession: 2828314363
  • assembly level: draft
  • database: img
  • NCBI tax ID: 92933

External links

@ref: 4917

culture collection no.: DSM 13131, GSF 71

straininfo link

  • @ref: 83167
  • straininfo: 49413

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny11211255Azospirillum doebereinerae sp. nov., a nitrogen-fixing bacterium associated with the C4-grass Miscanthus.Eckert B, Weber OB, Kirchhof G, Halbritter A, Stoffels M, Hartmann AInt J Syst Evol Microbiol10.1099/00207713-51-1-172001Azospirillum/*classification/genetics/isolation & purification/physiology, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, In Situ Hybridization, Fluorescence, Molecular Sequence Data, *Nitrogen Fixation/genetics, Oligonucleotide Probes, Phenotype, Phylogeny, Plant Roots/microbiology, Poaceae/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics
Phylogeny20081019Azospirillum thiophilum sp. nov., a diazotrophic bacterium isolated from a sulfide spring.Lavrinenko K, Chernousova E, Gridneva E, Dubinina G, Akimov V, Kuever J, Lysenko A, Grabovich MInt J Syst Evol Microbiol10.1099/ijs.0.018853-02010Azospirillum/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Russia, Sequence Analysis, DNA, Sulfides, Ubiquinone/chemistry, *Water MicrobiologyGenetics
31054383Structure of the O-specific polysaccharide of Azospirillum doebereinerae type strain GSF71(T).Sigida EN, Fedonenko YP, Shashkov AS, Zdorovenko EL, Konnova SA, Knirel YACarbohydr Res10.1016/j.carres.2019.04.0092019Azospirillum/*chemistry, Carbohydrate Conformation, Hydrolysis, Magnetic Resonance Spectroscopy, Polysaccharides/*chemistry
Phylogeny31135333Azospirillum griseum sp. nov., isolated from lakewater.Yang Y, Zhang R, Feng J, Wang C, Chen JInt J Syst Evol Microbiol10.1099/ijsem.0.0034602019Azospirillum/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Lakes/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/chemistryTranscriptome
Phylogeny31651377Azospirillum thermophilum sp. nov., isolated from a hot spring.Zhao ZL, Ming H, Ding CL, Ji WL, Cheng LJ, Niu MM, Zhang YM, Zhang LY, Meng XL, Nie GXInt J Syst Evol Microbiol10.1099/ijsem.0.0037882020Azospirillum/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Hot Springs/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/analogs & derivatives/chemistryTranscriptome
32733613Synthesis of the tetrasaccharide repeating unit of the O-specific polysaccharide of Azospirillum doebereinerae type strain GSF71(T) using linear and one-pot iterative glycosylations.Gucchait A, Shit P, Misra AKBeilstein J Org Chem10.3762/bjoc.16.1412020

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
4917Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13131)https://www.dsmz.de/collection/catalogue/details/culture/DSM-13131
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
83167Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID49413.1StrainInfo: A central database for resolving microbial strain identifiers