Strain identifier
BacDive ID: 139880
Type strain:
Species: Aminobacter ciceronei
Strain Designation: IMB-1
Variant: Isotype of BacDive ID 11861
Strain history: <- L. G. Miller, US Geological Survey, Menlo Park, USA; IMB-1 <- T. L. Connell Hancock
NCBI tax ID(s): 150723 (species)
General
@ref: 42488
BacDive-ID: 139880
DSM-Number: 15910
keywords: Bacteria, mesophilic
description: Aminobacter ciceronei IMB-1 is a mesophilic bacterium that was isolated from CH3Br-fumigated agricultural soil.
NCBI tax id
- NCBI tax id: 150723
- Matching level: species
strain history
- @ref: 42488
- history: <- L. G. Miller, US Geological Survey, Menlo Park, USA; IMB-1 <- T. L. Connell Hancock
doi: 10.13145/bacdive139880.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Phyllobacteriaceae
- genus: Aminobacter
- species: Aminobacter ciceronei
- full scientific name: Aminobacter ciceronei McDonald et al. 2005
@ref: 42488
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Phyllobacteriaceae
genus: Aminobacter
species: Aminobacter ciceronei
full scientific name: Aminobacter ciceronei McDonald et al. 2005
strain designation: IMB-1
variant: Isotype of BacDive ID 11861
type strain: no
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
42488 | TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) | yes | https://mediadive.dsmz.de/medium/545 | Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water |
42488 | R2A MEDIUM (DSMZ Medium 830) | yes | https://mediadive.dsmz.de/medium/830 | Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water |
118277 | CIP Medium 566 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=566 | |
118277 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
- @ref: 42488
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 42488
- sample type: CH3Br-fumigated agricultural soil
- geographic location: California, Irvine
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Agriculture | |
#Environmental | #Terrestrial | #Soil |
Safety information
risk assessment
- @ref: 42488
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
External links
@ref: 42488
culture collection no.: DSM 15910, ATCC 202197, CCUG 50580, CIP 108660, JCM 21751
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Metabolism | 16102909 | Analysis of genes involved in methyl halide degradation in Aminobacter lissarensis CC495. | Warner KL, Larkin MJ, Harper DB, Murrell JC, McDonald IR | FEMS Microbiol Lett | 10.1016/j.femsle.2005.07.021 | 2005 | Alphaproteobacteria/enzymology/*genetics/*metabolism, Amino Acid Sequence, Bacterial Proteins/chemistry/*genetics, Biodegradation, Environmental, Cloning, Molecular, Conserved Sequence, DNA, Bacterial/chemistry/genetics, Gene Order, *Genes, Bacterial, Hydrocarbons, Brominated/*metabolism, Hyphomicrobium/genetics, Methyl Chloride/*metabolism, Molecular Sequence Data, Multigene Family, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Synteny | Enzymology |
Phylogeny | 16166673 | Aminobacter ciceronei sp. nov. and Aminobacter lissarensis sp. nov., isolated from various terrestrial environments. | McDonald IR, Kampfer P, Topp E, Warner KL, Cox MJ, Hancock TLC, Miller LG, Larkin MJ, Ducrocq V, Coulter C, Harper DB, Murrell JC, Oremland RS | Int J Syst Evol Microbiol | 10.1099/ijs.0.63716-0 | 2005 | *Agriculture, Alphaproteobacteria/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Biodegradation, Environmental, California, Canada, Carbamates/metabolism, Culture Media, DNA, Bacterial/analysis, Fagus, Genes, rRNA, Herbicides/metabolism, Hydrocarbons, Brominated/metabolism, Methyl Chloride/metabolism, Molecular Sequence Data, Northern Ireland, Pesticides/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, *Trees, Triazines/metabolism | Metabolism |
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
42488 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15910 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15910) | |
118277 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108660 | Collection of Institut Pasteur (CIP 108660) |