Strain identifier

BacDive ID: 139880

Type strain: No

Species: Aminobacter ciceronei

Strain Designation: IMB-1

Variant: Isotype of BacDive ID 11861

Strain history: <- L. G. Miller, US Geological Survey, Menlo Park, USA; IMB-1 <- T. L. Connell Hancock

NCBI tax ID(s): 150723 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 42488

BacDive-ID: 139880

DSM-Number: 15910

keywords: Bacteria, mesophilic

description: Aminobacter ciceronei IMB-1 is a mesophilic bacterium that was isolated from CH3Br-fumigated agricultural soil.

NCBI tax id

  • NCBI tax id: 150723
  • Matching level: species

strain history

  • @ref: 42488
  • history: <- L. G. Miller, US Geological Survey, Menlo Park, USA; IMB-1 <- T. L. Connell Hancock

doi: 10.13145/bacdive139880.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Phyllobacteriaceae
  • genus: Aminobacter
  • species: Aminobacter ciceronei
  • full scientific name: Aminobacter ciceronei McDonald et al. 2005

@ref: 42488

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Phyllobacteriaceae

genus: Aminobacter

species: Aminobacter ciceronei

full scientific name: Aminobacter ciceronei McDonald et al. 2005

strain designation: IMB-1

variant: Isotype of BacDive ID 11861

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
42488TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)yeshttps://mediadive.dsmz.de/medium/545Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water
42488R2A MEDIUM (DSMZ Medium 830)yeshttps://mediadive.dsmz.de/medium/830Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
118277CIP Medium 566yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=566
118277CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

  • @ref: 42488
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 42488
  • sample type: CH3Br-fumigated agricultural soil
  • geographic location: California, Irvine
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture
#Environmental#Terrestrial#Soil

Safety information

risk assessment

  • @ref: 42488
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

External links

@ref: 42488

culture collection no.: DSM 15910, ATCC 202197, CCUG 50580, CIP 108660, JCM 21751

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Metabolism16102909Analysis of genes involved in methyl halide degradation in Aminobacter lissarensis CC495.Warner KL, Larkin MJ, Harper DB, Murrell JC, McDonald IRFEMS Microbiol Lett10.1016/j.femsle.2005.07.0212005Alphaproteobacteria/enzymology/*genetics/*metabolism, Amino Acid Sequence, Bacterial Proteins/chemistry/*genetics, Biodegradation, Environmental, Cloning, Molecular, Conserved Sequence, DNA, Bacterial/chemistry/genetics, Gene Order, *Genes, Bacterial, Hydrocarbons, Brominated/*metabolism, Hyphomicrobium/genetics, Methyl Chloride/*metabolism, Molecular Sequence Data, Multigene Family, Sequence Analysis, DNA, Sequence Homology, Amino Acid, SyntenyEnzymology
Phylogeny16166673Aminobacter ciceronei sp. nov. and Aminobacter lissarensis sp. nov., isolated from various terrestrial environments.McDonald IR, Kampfer P, Topp E, Warner KL, Cox MJ, Hancock TLC, Miller LG, Larkin MJ, Ducrocq V, Coulter C, Harper DB, Murrell JC, Oremland RSInt J Syst Evol Microbiol10.1099/ijs.0.63716-02005*Agriculture, Alphaproteobacteria/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Biodegradation, Environmental, California, Canada, Carbamates/metabolism, Culture Media, DNA, Bacterial/analysis, Fagus, Genes, rRNA, Herbicides/metabolism, Hydrocarbons, Brominated/metabolism, Methyl Chloride/metabolism, Molecular Sequence Data, Northern Ireland, Pesticides/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, *Trees, Triazines/metabolismMetabolism

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
42488Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-15910Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15910)
118277Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108660Collection of Institut Pasteur (CIP 108660)