Archive BacDiveID:10.13145/bacdive139875.20240510.9

Strain identifier

BacDive ID: 139875

Type strain:

Species: Pseudoalteromonas sp.

Strain Designation: TK-34 (2)

Strain history: <- T. Gutierrez, Heriot-Watt Univ., Edinburgh, UK; TK-34 (2) <- T. Gutierrez, Univ. North Carolina at Chapel Hill, USA

NCBI tax ID(s): 53249 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 42483

BacDive-ID: 139875

DSM-Number: 26664

keywords: 16S sequence, Bacteria

description: Pseudoalteromonas sp. TK-34 is a bacterium that was isolated from oil-contaminated surface water.

NCBI tax id

NCBI tax id: 53249
Matching level: species

strain history

@ref: 42483
history: <- T. Gutierrez, Heriot-Watt Univ., Edinburgh, UK; TK-34 (2) <- T. Gutierrez, Univ. North Carolina at Chapel Hill, USA

doi: 10.13145/bacdive139875.20240510.9

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Gammaproteobacteria
order: Alteromonadales
family: Pseudoalteromonadaceae
genus: Pseudoalteromonas
species: Pseudoalteromonas sp.
full scientific name: Pseudoalteromonas Gauthier et al. 1995

@ref: 42483

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Pseudoalteromonadaceae

genus: Pseudoalteromonas

species: Pseudoalteromonas sp.

full scientific name: Pseudoalteromonas sp.

strain designation: TK-34 (2)

type strain: no

Culture and growth conditions

culture medium

@ref: 42483
name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
growth: yes
link: https://mediadive.dsmz.de/medium/514
composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 19.45 g/l Sodium pyruvate 10.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@ref: 42483
growth: positive
type: growth
temperature: 25

Isolation, sampling and environmental information

isolation

@ref: 42483
sample type: oil-contaminated surface water
geographic location: Gulf of Mexico
country: USA
origin.country: USA
continent: North America

isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Contamination	#Oil (Fuel)
#Environmental	#Aquatic	#Surface water

taxonmaps

@ref: 69479
File name: preview.99_1002.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_57;96_122;97_129;98_145;99_1002&stattab=map
Last taxonomy: Pseudoalteromonas
16S sequence: KC161581
Sequence Identity:
Total samples: 3222
soil counts: 24
aquatic counts: 2792
animal counts: 384
plant counts: 22

Sequence information

16S sequences

@ref: 42483
description: Pseudoalteromonas sp. TK-34(2) 16S ribosomal RNA gene, partial sequence
accession: KC161581
length: 1376
database: nuccore
NCBI tax ID: 1276896

External links

@ref: 42483

culture collection no.: DSM 26664

straininfo link

@ref: 96312
straininfo: 399323

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
42483	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-26664	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26664)
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.	MicrobeAtlas 1.0 beta	https://microbeatlas.org/
96312	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID399323.1