Strain identifier
BacDive ID: 139842
Type strain:
Species: Paenibacillus sp.
Strain Designation: IDA0463, R-15841
Strain history: <- J. Heyrman, Lab. Microbiology, Ghent Univ., Belgium; LMG 23879 <- A. Felske; IDA0463
NCBI tax ID(s): 58172 (species)
General
@ref: 42450
BacDive-ID: 139842
DSM-Number: 19452
keywords: 16S sequence, Bacteria, mesophilic
description: Paenibacillus sp. IDA0463 is a mesophilic bacterium that was isolated from grassland soil.
NCBI tax id
- NCBI tax id: 58172
- Matching level: species
strain history
- @ref: 42450
- history: <- J. Heyrman, Lab. Microbiology, Ghent Univ., Belgium; LMG 23879 <- A. Felske; IDA0463
doi: 10.13145/bacdive139842.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Paenibacillus
- species: Paenibacillus sp.
- full scientific name: Paenibacillus Ash et al. 1994
synonyms
- @ref: 20215
- synonym: Aerobacillus
@ref: 42450
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Paenibacillaceae
genus: Paenibacillus
species: Paenibacillus sp.
full scientific name: Paenibacillus sp.
strain designation: IDA0463, R-15841
type strain: no
Culture and growth conditions
culture medium
- @ref: 42450
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://mediadive.dsmz.de/medium/220
- composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
culture temp
- @ref: 42450
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 42450
- sample type: grassland soil
- country: Netherlands
- origin.country: NLD
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Grassland |
#Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_5647.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_335;97_1860;98_4209;99_5647&stattab=map
- Last taxonomy: Paenibacillus
- 16S sequence: AM745263
- Sequence Identity:
- Total samples: 1496
- soil counts: 546
- aquatic counts: 286
- animal counts: 395
- plant counts: 269
Sequence information
16S sequences
- @ref: 42450
- description: Paenibacillus caespitis partial 16S rRNA gene, type strain LMG 23879T
- accession: AM745263
- length: 1513
- database: ena
- NCBI tax ID: 446368
External links
@ref: 42450
culture collection no.: DSM 19452, LMG 23879
straininfo link
- @ref: 96283
- straininfo: 403680
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
42450 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19452 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19452) | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
96283 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403680.1 |