Strain identifier
BacDive ID: 139837
Type strain: 
Species: Paenibacillus sp.
Strain history: <- S. T. Lee, Korean Advanced Institute of Science and Technology (KAIST), Daejeon <- W.-T. Im; Gsoil 3125
NCBI tax ID(s): 58172 (species)
version 8.1 (current version)
General
@ref: 42445
BacDive-ID: 139837
DSM-Number: 18123
keywords: 16S sequence, Bacteria, mesophilic
description: Paenibacillus sp. DSM 18123 is a mesophilic bacterium that was isolated from soil, ginseng field.
NCBI tax id
- NCBI tax id: 58172
- Matching level: species
strain history
- @ref: 42445
- history: <- S. T. Lee, Korean Advanced Institute of Science and Technology (KAIST), Daejeon <- W.-T. Im; Gsoil 3125
doi: 10.13145/bacdive139837.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Paenibacillus
- species: Paenibacillus sp.
- full scientific name: Paenibacillus Ash et al. 1994
synonyms
- @ref: 20215
- synonym: Aerobacillus
@ref: 42445
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Paenibacillaceae
genus: Paenibacillus
species: Paenibacillus sp.
full scientific name: Paenibacillus sp.
type strain: no
Culture and growth conditions
culture medium
- @ref: 42445
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
- @ref: 42445
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 42445
- sample type: soil, ginseng field
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Agriculture | #Field |
| #Environmental | #Terrestrial | #Soil |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
taxonmaps
- @ref: 69479
- File name: preview.99_2145.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_5;97_1380;98_1675;99_2145&stattab=map
- Last taxonomy: Paenibacillus
- 16S sequence: AB245383
- Sequence Identity:
- Total samples: 2282
- soil counts: 1473
- aquatic counts: 176
- animal counts: 399
- plant counts: 234
Sequence information
16S sequences
- @ref: 42445
- description: Paenibacillus ginsengagri gene for 16S rRNA, partial sequence, strain: Gsoil 3125
- accession: AB245383
- length: 1469
- database: ena
- NCBI tax ID: 363857
External links
@ref: 42445
culture collection no.: DSM 18123, Gsoil 3125
straininfo link
- @ref: 96278
- straininfo: 398130
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 42445 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18123 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18123) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 96278 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398130.1 |