Strain identifier

BacDive ID: 139744

Type strain: No

Species: Lactobacillus sp.

Strain Designation: SIID2227-1-3b

Strain history: <- T. Nakajima, Asakikawa, Hokkaido; SIID2227-1-3b <- TechnoSuruga Co., Ltd., Shizouka, Japan

NCBI tax ID(s): 1591 (species)

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General

@ref: 42355

BacDive-ID: 139744

DSM-Number: 17770

keywords: 16S sequence, Bacteria, mesophilic

description: Lactobacillus sp. SIID2227-1-3b is a mesophilic bacterium that was isolated from beverage.

NCBI tax id

  • NCBI tax id: 1591
  • Matching level: species

strain history

  • @ref: 42355
  • history: <- T. Nakajima, Asakikawa, Hokkaido; SIID2227-1-3b <- TechnoSuruga Co., Ltd., Shizouka, Japan

doi: 10.13145/bacdive139744.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Lactobacillus
  • species: Lactobacillus sp.
  • full scientific name: Lactobacillus Beijerinck 1901 (Approved Lists 1980)

@ref: 42355

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Lactobacillus

species: Lactobacillus sp.

full scientific name: Lactobacillus sp.

strain designation: SIID2227-1-3b

type strain: no

Culture and growth conditions

culture medium

  • @ref: 42355
  • name: MRS MEDIUM (DSMZ Medium 11)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/11
  • composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

culture temp

  • @ref: 42355
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose-builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin+builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside+builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
42355----+-----++++------+-++-++-+--++------+----------

Isolation, sampling and environmental information

isolation

  • @ref: 42355
  • sample type: beverage
  • country: Japan
  • origin.country: JPN
  • continent: Asia

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Food production
  • Cat3: #Beverage

taxonmaps

  • @ref: 69479
  • File name: preview.99_5173.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_45;96_1207;97_3071;98_3855;99_5173&stattab=map
  • Last taxonomy: Liquorilactobacillus
  • 16S sequence: AB242320
  • Sequence Identity:
  • Total samples: 6197
  • soil counts: 156
  • aquatic counts: 230
  • animal counts: 5520
  • plant counts: 291

Sequence information

16S sequences

  • @ref: 42355
  • description: Lactobacillus mobilis gene for 16S rRNA, partial sequence
  • accession: AB242320
  • length: 1552
  • database: ena
  • NCBI tax ID: 357762

External links

@ref: 42355

culture collection no.: DSM 17770

straininfo link

  • @ref: 96196
  • straininfo: 404103

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
42355Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-17770Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17770)
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
96196Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID404103.1