Strain identifier

BacDive ID: 139734

Type strain: Yes

Species: Corynebacterium fournieri

Strain history: <- CHU Hopital de la Timone, Fédération de Bactériologie Virologie Hygiène Hospitalière; Marseille-P2948 <- Unité de Recherche pour les Maladies Tropicales Emergentes, Fédération de Bactériologie Viorologie Hygiène Hospitalière; Marseille-P2948

NCBI tax ID(s): 1852390 (species)

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General

@ref: 42345

BacDive-ID: 139734

DSM-Number: 103271

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Corynebacterium fournieri DSM 103271 is a mesophilic bacterium that was isolated from Vaginal sample from patient analysed in Marseille.

NCBI tax id

  • NCBI tax id: 1852390
  • Matching level: species

strain history

  • @ref: 42345
  • history: <- CHU Hopital de la Timone, Fédération de Bactériologie Virologie Hygiène Hospitalière; Marseille-P2948 <- Unité de Recherche pour les Maladies Tropicales Emergentes, Fédération de Bactériologie Viorologie Hygiène Hospitalière; Marseille-P2948

doi: 10.13145/bacdive139734.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Corynebacteriaceae
  • genus: Corynebacterium
  • species: Corynebacterium fournieri
  • full scientific name: Corynebacterium fournieri corrig. Diop et al. 2018

  • synonyms

    • @ref: 20215
    • synonym: Corynebacterium fournierii

@ref: 42345

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Corynebacteriaceae

genus: Corynebacterium

species: Corynebacterium fournieri

full scientific name: Corynebacterium fournieri Diop et al. 2018

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no98.875
69480100positive

multimedia

  • @ref: 42345
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_103271.jpg
  • caption: Medium 535a 37°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 42345
  • name: TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/535a
  • composition: Name: TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a) Composition: None 50.0 g/l Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

  • @ref: 42345
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.999

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369gelatinase-
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
42345-+/----+/------+/---------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
42345-----+--------------

Isolation, sampling and environmental information

isolation

  • @ref: 42345
  • sample type: Vaginal sample from patient analysed in Marseille
  • geographic location: Marseille
  • country: France
  • origin.country: FRA
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host Body-Site#Urogenital tract#Vagina
#Infection#Patient

Sequence information

16S sequences

  • @ref: 42345
  • description: Corynebacterium sp. Marseille-P2948 partial 16S rRNA gene, strain Marseille-P2948
  • accession: LT576414
  • length: 1481
  • database: ena
  • NCBI tax ID: 1852390

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Corynebacterium fournieri Marseille-P2948GCA_900176865scaffoldncbi1852390
66792Corynebacterium fournieri Marseille-P29482862041466draftimg1852390

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno92.398no
flagellatedno96.295no
gram-positiveyes94.837no
anaerobicno98.987no
aerobicno54.139no
halophileyes66.849no
spore-formingno94.625no
thermophileno95.689yes
glucose-utilyes80.03no
glucose-fermentno50no

External links

@ref: 42345

culture collection no.: DSM 103271, Marseille-P2948, CSUR P2948

straininfo link

  • @ref: 96186
  • straininfo: 397396

literature

Pubmed-IDtitleauthorsjournalDOIyeartopicmeshtopic2
28480043'Corynebacterium fournierii,' a new bacterial species isolated from the vaginal sample of a patient with bacterial vaginosis.Diop K, Bretelle F, Raoult D, Fenollar FNew Microbes New Infect10.1016/j.nmni.2017.03.0052017
29383461Corynebacterium fournierii sp. nov., isolated from the female genital tract of a patient with bacterial vaginosis.Diop K, Nguyen TT, Delerce J, Armstrong N, Raoult D, Bretelle F, Fenollar FAntonie Van Leeuwenhoek10.1007/s10482-018-1022-z2018PhylogenyAdult, Bacterial Typing Techniques, Base Composition, Corynebacterium/classification/genetics/*isolation & purification/metabolism, Corynebacterium Infections/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Female, Humans, Phylogeny, RNA, Ribosomal, 16S/genetics, Vagina/microbiology, Vaginosis, Bacterial/*microbiologyMetabolism

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
42345Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-103271Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103271)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
96186Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID397396.1