Strain identifier
BacDive ID: 139728
Type strain:
Species: Thomasclavelia ramosa
Strain Designation: 8/2/54BFAA
Strain history: <- E. Allen-Vercoe, Univ. Guelph, Ontario, Canada; 8/2/54BFAA <- Univ. Calgary, Canada
NCBI tax ID(s): 1547 (species)
General
@ref: 42339
BacDive-ID: 139728
DSM-Number: 24812
keywords: genome sequence, Bacteria, mesophilic
description: Thomasclavelia ramosa 8/2/54BFAA is a mesophilic bacterium that was isolated from clinical sample, human gut biopsy.
NCBI tax id
- NCBI tax id: 1547
- Matching level: species
strain history
- @ref: 42339
- history: <- E. Allen-Vercoe, Univ. Guelph, Ontario, Canada; 8/2/54BFAA <- Univ. Calgary, Canada
doi: 10.13145/bacdive139728.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Erysipelotrichia
- order: Erysipelotrichales
- family: Coprobacillaceae
- genus: Thomasclavelia
- species: Thomasclavelia ramosa
- full scientific name: Thomasclavelia ramosa (Veillon and Zuber 1898) Lawson et al. 2023
synonyms
@ref synonym 20215 Erysipelatoclostridium ramosum 20215 Bacillus ramosus 20215 Clostridium ramosum
@ref: 42339
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Anaeroplasmatales
family: Clostridiaceae
genus: Clostridium
species: Clostridium ramosum
full scientific name: Clostridium ramosum (Veillon and Zuber 1898) Holdeman et al. 1971
strain designation: 8/2/54BFAA
type strain: no
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
42339 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
42339 | CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) | yes | https://mediadive.dsmz.de/medium/110 | Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water |
culture temp
- @ref: 42339
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 42339
- sample type: clinical sample, human gut biopsy
- geographic location: Alberta
- country: Canada
- origin.country: CAN
- continent: North America
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | |
#Host Body-Site | #Gastrointestinal tract | #Stomach |
#Infection | #Medical environment | #Clinic |
#Infection | #Patient | #Biopsy |
Safety information
risk assessment
- @ref: 42339
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Erysipelatoclostridium ramosum strain FDAARGOS_1519 | 1547.167 | complete | patric | 1547 |
66792 | Erysipelatoclostridium ramosum strain FDAARGOS_1519 | 1547.234 | complete | patric | 1547 |
66792 | Erysipelatoclostridium ramosum strain FDAARGOS_1519 | 1547.168 | complete | patric | 1547 |
66792 | Erysipelatoclostridium ramosum strain FDAARGOS_1519 | 1547.199 | complete | patric | 1547 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 89.343 | no |
gram-positive | yes | 93.57 | no |
anaerobic | yes | 97.975 | no |
aerobic | no | 98.656 | no |
halophile | no | 76.893 | no |
spore-forming | no | 53.839 | no |
thermophile | no | 98.343 | no |
glucose-util | yes | 87.198 | no |
flagellated | no | 92.896 | no |
glucose-ferment | yes | 65.208 | no |
External links
@ref: 42339
culture collection no.: DSM 24812, BEI HM-176
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
42339 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24812 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24812) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |