Strain identifier

BacDive ID: 139728

Type strain: No

Species: Thomasclavelia ramosa

Strain Designation: 8/2/54BFAA

Strain history: <- E. Allen-Vercoe, Univ. Guelph, Ontario, Canada; 8/2/54BFAA <- Univ. Calgary, Canada

NCBI tax ID(s): 1547 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 42339

BacDive-ID: 139728

DSM-Number: 24812

keywords: genome sequence, Bacteria, mesophilic

description: Thomasclavelia ramosa 8/2/54BFAA is a mesophilic bacterium that was isolated from clinical sample, human gut biopsy.

NCBI tax id

  • NCBI tax id: 1547
  • Matching level: species

strain history

  • @ref: 42339
  • history: <- E. Allen-Vercoe, Univ. Guelph, Ontario, Canada; 8/2/54BFAA <- Univ. Calgary, Canada

doi: 10.13145/bacdive139728.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Erysipelotrichia
  • order: Erysipelotrichales
  • family: Coprobacillaceae
  • genus: Thomasclavelia
  • species: Thomasclavelia ramosa
  • full scientific name: Thomasclavelia ramosa (Veillon and Zuber 1898) Lawson et al. 2023
  • synonyms

    @refsynonym
    20215Erysipelatoclostridium ramosum
    20215Bacillus ramosus
    20215Clostridium ramosum

@ref: 42339

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Anaeroplasmatales

family: Clostridiaceae

genus: Clostridium

species: Clostridium ramosum

full scientific name: Clostridium ramosum (Veillon and Zuber 1898) Holdeman et al. 1971

strain designation: 8/2/54BFAA

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
42339COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
42339CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)yeshttps://mediadive.dsmz.de/medium/110Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water

culture temp

  • @ref: 42339
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 42339
  • sample type: clinical sample, human gut biopsy
  • geographic location: Alberta
  • country: Canada
  • origin.country: CAN
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Gastrointestinal tract#Stomach
#Infection#Medical environment#Clinic
#Infection#Patient#Biopsy

Safety information

risk assessment

  • @ref: 42339
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Erysipelatoclostridium ramosum strain FDAARGOS_15191547.167completepatric1547
66792Erysipelatoclostridium ramosum strain FDAARGOS_15191547.234completepatric1547
66792Erysipelatoclostridium ramosum strain FDAARGOS_15191547.168completepatric1547
66792Erysipelatoclostridium ramosum strain FDAARGOS_15191547.199completepatric1547

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno89.343no
gram-positiveyes93.57no
anaerobicyes97.975no
aerobicno98.656no
halophileno76.893no
spore-formingno53.839no
thermophileno98.343no
glucose-utilyes87.198no
flagellatedno92.896no
glucose-fermentyes65.208no

External links

@ref: 42339

culture collection no.: DSM 24812, BEI HM-176

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
42339Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-24812Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24812)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes