Strain identifier

BacDive ID: 13972

Type strain: Yes

Species: Azospirillum brasilense

Strain Designation: Sp 7

Strain history: ATCC 29145 <-- J. Döbereiner Sp 7.

NCBI tax ID(s): 192 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 862

BacDive-ID: 13972

DSM-Number: 1690

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile

description: Azospirillum brasilense Sp 7 is a mesophilic, motile bacterium that was isolated from Digitaria decumbens roots.

NCBI tax id

  • NCBI tax id: 192
  • Matching level: species

strain history

@refhistory
862<- ATCC <- J. Döbereiner, Sp 7
67770ATCC 29145 <-- J. Döbereiner Sp 7.

doi: 10.13145/bacdive13972.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Azospirillaceae
  • genus: Azospirillum
  • species: Azospirillum brasilense
  • full scientific name: Azospirillum brasilense corrig. Tarrand et al. 1979 (Approved Lists 1980)
  • synonyms

    @refsynonym
    20215Azospirillum brasiliense
    20215Roseomonas fauriae

@ref: 862

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodospirillales

family: Azospirillaceae

genus: Azospirillum

species: Azospirillum brasilense

full scientific name: Azospirillum brasilense Tarrand et al. 1979

strain designation: Sp 7

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes97.172
6948099.987negative

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
862R2A MEDIUM (DSMZ Medium 830)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium830.pdf
862SSE/HD1:10 (DSMZ Medium 1426)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1426.pdf
862HETEROTROPHIC MEDIUM H3P (DSMZ Medium 428)yeshttps://mediadive.dsmz.de/medium/428Name: HETEROTROPHIC MEDIUM H3P (DSMZ Medium 428) Composition: Agar 19.802 g/l Na2HPO4 x 2 H2O 2.87129 g/l KH2PO4 2.27723 g/l D-Glucose 1.9802 g/l Na-lactate 0.990099 g/l Na-pyruvate 0.990099 g/l D-Mannitol 0.990099 g/l DL-Malate 0.990098 g/l Na-acetate 0.990098 g/l Yeast extract 0.990098 g/l NH4Cl 0.990098 g/l Disodium succinate 0.990098 g/l MgSO4 x 7 H2O 0.495049 g/l Ferric ammonium citrate 0.049505 g/l CaCl2 x 2 H2O 0.00990098 g/l NaVO3 x H2O 0.00495049 g/l Thiamine-HCl x 2 H2O 0.00247525 g/l Nicotinic acid 0.00247525 g/l Pyridoxine hydrochloride 0.00247525 g/l Calcium pantothenate 0.00247525 g/l H3BO3 0.00148515 g/l CoCl2 x 6 H2O 0.000990099 g/l Riboflavin 0.00049505 g/l ZnSO4 x 7 H2O 0.00049505 g/l MnCl2 x 4 H2O 0.000148515 g/l Na2MoO4 x 2 H2O 0.000148515 g/l NiCl2 x 6 H2O 9.90099e-05 g/l CuCl2 x 2 H2O 4.95049e-05 g/l Vitamin B12 4.95049e-05 g/l Folic acid 9.90099e-06 g/l Biotin 4.9505e-06 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
862positivegrowth28mesophilic
862positivegrowth30mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.748

compound production

  • @ref: 862
  • compound: nitrogenase

Isolation, sampling and environmental information

isolation

@refsample typehost speciescountryorigin.countrycontinentgeographic location
862Digitaria decumbens rootsDigitaria decumbensBrazilBRAMiddle and South America
67770Digitaria decumbens rootsDigitaria decumbensBrazilBRAMiddle and South AmericaRio de Janeiro

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Root (Rhizome)

Safety information

risk assessment

  • @ref: 862
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Azospirillum brasilense strain ATCC 29145 16S ribosomal RNA gene, partial sequenceAY3241101442ena192
20218Azospirillum brasilense strain DSM 1690 16S ribosomal RNA gene, partial sequenceGU2564381400ena192
20218Azospirillum brasilense gene for 16S rRNA, partial sequence, strain: NBRC 102289AB6817451265ena192
20218A.brasilense (NCIMB 11860) 16S ribosomal RNAZ296171461ena192
20218A.brasilense (Sp7) 16S rRNA geneX797391403ena192

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Azospirillum brasilense strain Sp 7 strain Sp7192.73plasmidpatric192
66792Azospirillum brasilense strain Sp 7 strain Sp7192.76plasmidpatric192
66792Azospirillum brasilense strain Sp 7 strain Sp7192.77plasmidpatric192
66792Azospirillum brasilense strain Sp 7 strain Sp7192.75plasmidpatric192
66792Azospirillum brasilense strain Sp 7 strain Sp7192.74plasmidpatric192
66792Azospirillum brasilense strain Sp7192.50completepatric192
66792Azospirillum sp. Sp 71685931.3wgspatric1685931
66792Azospirillum sp. TSA6c709813.3wgspatric709813
66792Azospirillum sp. TSH100652764.3wgspatric652764
66792Azospirillum sp. TSH20652754.3wgspatric652754
66792Azospirillum sp. TSH58664962.4wgspatric664962
66792Azospirillum sp. TSH64652740.3wgspatric652740
66792Azospirillum sp. TSH7652751.3wgspatric652751
66792Azospirillum sp. TSO22-1716789.3wgspatric716789
66792Azospirillum sp. TSO35-2716796.3wgspatric716796
66792Azospirillum sp. TSO5716760.3wgspatric716760
66792Azospirillum brasilense DSM 16902596583658draftimg192
67770Azospirillum brasilense Sp 7GCA_002027385contigncbi192
66792Azospirillum brasilense Sp 7GCA_001315015completencbi192
66792Azospirillum brasilense Sp 7GCA_007827425contigncbi192
66792Azospirillum brasilense Sp 7GCA_008274945completencbi192

GC content

@refGC-contentmethod
86270.0
86267.5
6777067.5thermal denaturation, midpoint method (Tm)
6777070thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes88.452no
gram-positiveno98.941no
anaerobicno91.346no
aerobicyes72.832no
halophileno93.144no
spore-formingno91.946no
glucose-utilyes81.635no
flagellatedyes64.726no
thermophileno97.697no
glucose-fermentno87.845no

External links

@ref: 862

culture collection no.: DSM 1690, ATCC 29145, JCM 1224, BCRC 12270, CCM 3862, CECT 590, IAM 12400, ICMP 8671, LMG 1263, LMG 13127, NBRC 102289, NCIMB 11860, NRRL B-14647, VKM B-1547

straininfo link

  • @ref: 83143
  • straininfo: 7462

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny356945A taxonomic study of the Spirillum lipoferum group, with descriptions of a new genus, Azospirillum gen. nov. and two species, Azospirillum lipoferum (Beijerinck) comb. nov. and Azospirillum brasilense sp. nov.Tarrand JJ, Krieg NR, Dobereiner JCan J Microbiol10.1139/m78-1601978Culture Media, Culture Techniques, DNA, Bacterial/*analysis, Microscopy, Electron, Microscopy, Phase-Contrast, Nucleic Acid Denaturation, Spirillum/*classification/cytology/physiology, Terminology as TopicCultivation
Enzymology2675764Cloning and expression in Escherichia coli of the Azospirillum brasilense Sp7 gene encoding ampicillin resistance.Verreth C, Cammue B, Swinnen P, Crombez D, Michielsen A, Michiels K, Van Gool A, Vanderleyden JAppl Environ Microbiol10.1128/aem.55.8.2056-2060.19891989Ampicillin Resistance/*genetics, Blotting, Southern, Centrifugation, Density Gradient, Cloning, Molecular, DNA, Bacterial/genetics, Escherichia coli/drug effects/enzymology/*genetics, *Gene Expression Regulation, Genes, Bacterial, Gram-Negative Bacteria/drug effects/enzymology/*genetics, Nucleic Acid Hybridization, Restriction Mapping, beta-Lactamases/biosynthesis/*geneticsPathogenicity
Enzymology2893582Cloning and characterization of the glnA gene of Azospirillum brasilense Sp7.Bozouklian H, Fogher C, Elmerich CAnn Inst Pasteur Microbiol (1985)10.1016/s0769-2609(86)80089-81986*Cloning, Molecular, *Genes, *Genes, Bacterial, Glutamate-Ammonia Ligase/genetics, Nitrogen Fixation/genetics, Plasmids, Spirillum/*genetics
Cultivation3104311Cyst production and brown pigment formation in aging cultures of Azospirillum brasilense ATCC 29145.Sadasivan L, Neyra CAJ Bacteriol10.1128/jb.169.4.1670-1677.19871987Bacteria/*cytology/metabolism/ultrastructure, Centrifugation, Density Gradient, Culture Media, Cytoplasmic Granules/ultrastructure, Hydroxybutyrates/analysis, Microscopy, Electron, Pigments, Biological/analysis/*biosynthesis, *Polyesters, Polymers/analysisBiotechnology
Phylogeny3182731Isolation and characterization of Azospirillum brasilense loci that correct Rhizobium meliloti exoB and exoC mutations.Michiels KW, Vanderleyden J, Van Gool AP, Signer ERJ Bacteriol10.1128/jb.170.11.5401-5404.19881988*Genes, *Genes, Bacterial, Genetic Complementation Test, *Mutation, Nitrogenase/genetics, Polysaccharides, Bacterial/*genetics, Rhizobium/*genetics, Spirillum/*genetics
Phylogeny3894333Flocculation in Azospirillum brasilense and Azospirillum lipoferum: exopolysaccharides and cyst formation.Sadasivan L, Neyra CAJ Bacteriol10.1128/jb.163.2.716-723.19851985Aerobiosis, Cell Survival, Flocculation, Gram-Negative Aerobic Bacteria/cytology/growth & development/*physiology, Microscopy, Electron, Microscopy, Phase-Contrast, Polysaccharides, Bacterial/*analysis, Species Specificity, Spores, Bacterial/physiology
Metabolism6425263Intermediary carbon metabolism of Azospirillum brasilense.Loh WH, Randles CI, Sharp WR, Miller RHJ Bacteriol10.1128/jb.158.1.264-268.19841984Acetates/*metabolism, Acetyl Coenzyme A/metabolism, Bacteria/enzymology/*metabolism, Carbon Dioxide/metabolism, Cell Wall/metabolism, Citric Acid Cycle, Culture Media, Gluconeogenesis, Glucose/*metabolism, Kinetics, Lipids/biosynthesis, Oxygen Consumption, Pyruvate Dehydrogenase Complex/metabolism, Pyruvates/*metabolism, Pyruvic Acid, Succinates/*metabolism, Succinic AcidEnzymology
Metabolism6588050Catabolism of carbohydrates and organic acids and expression of nitrogenase by azospirilla.Martinez-Drets G, Del Gallo M, Burpee C, Burris RHJ Bacteriol10.1128/jb.159.1.80-85.19841984*Carbohydrate Metabolism, Carbon Radioisotopes, Carboxylic Acids/*metabolism, Citric Acid Cycle, Fructose/metabolism, Glucose/metabolism, Gram-Negative Aerobic Bacteria/genetics/*metabolism, Hexosephosphates/metabolism, Ketoglutaric Acids/metabolism, Kinetics, Nitrogenase/*genetics, Species Specificity, Sucrose/metabolismEnzymology
Metabolism6789740Physiological properties and plasmid content of several strains of Azospirillum brasilense and A. lipoferum.Franche C, Elmerich CAnn Microbiol (Paris)1981Bacteria/metabolism, *Bacterial Physiological Phenomena, Bacteriophages/isolation & purification, Lysogeny/drug effects, Microbial Sensitivity Tests, Mitomycin, Mitomycins/pharmacology, Molecular Weight, Nitrogen Fixation, *PlasmidsEnzymology
Enzymology6812526Enhancement of specific nitrogenase activity in Azospirillum brasilense and Klebsiella pneumoniae, inhibition in Rhizobium japonicum under air by phenol.Werner D, Krotzky A, Berggold R, Thierfelder H, Preiss MArch Microbiol10.1007/BF006908171982Bacteria/drug effects/*enzymology, Klebsiella pneumoniae/drug effects/*enzymology, Nitrogenase/*analysis, Phenol, Phenols/metabolism/*pharmacology, Rhizobium/drug effects/*enzymologyPathogenicity
Pathogenicity11949252[Effect of Azospirillum brasilense lectin on the kinetics of lymph nodes cell populations and cytokine status in experimental animals].Nikitina VE, Bugaeva IO, Ponomareva EG, Tikhomirova EI, Bogomolova NVZh Mikrobiol Epidemiol Immunobiol2002Animals, Azospirillum brasilense, Cell Cycle/drug effects, Cytokines/*drug effects/*metabolism, Lectins/isolation & purification/*pharmacology, Lymph Nodes/*cytology/*drug effects, Lymphocyte Count, Male, MiceEnzymology
Phylogeny15213753Molecular and physiological comparison of Azospirillum spp. isolated from Rhizoctonia solani mycelia, wheat rhizosphere, and human skin wounds.Cohen MF, Han XY, Mazzola MCan J Microbiol10.1139/w04-0072004Azospirillum/*classification/genetics/isolation & purification/physiology, Culture Media, Humans, Plant Roots/*microbiology, Rhizoctonia, Sequence Analysis, DNA, Skin/injuries, Wounds and Injuries/*microbiologyCultivation
16345490Association of azospirillum with grass roots.Umali-Garcia M, Hubbell DH, Gaskins MH, Dazzo FBAppl Environ Microbiol10.1128/aem.39.1.219-226.19801980
16346311Enhanced Mineral Uptake by Zea mays and Sorghum bicolor Roots Inoculated with Azospirillum brasilense.Lin W, Okon Y, Hardy RWAppl Environ Microbiol10.1128/aem.45.6.1775-1779.19831983
16346482Application of the Indirect Immunoperoxidase Stain Technique to the Flagella of Azospirillum brasilense.Hall PG, Krieg NRAppl Environ Microbiol10.1128/aem.47.2.433-435.19841984
Metabolism16347043Comparison of Two Cellulomonas Strains and Their Interaction with Azospirillum brasilense in Degradation of Wheat Straw and Associated Nitrogen Fixation.Halsall DM, Gibson AHAppl Environ Microbiol10.1128/aem.51.4.855-861.19861986
16349041Chemotaxis of azospirillum species to aromatic compounds.Lopez-de-Victoria G, Lovell CRAppl Environ Microbiol10.1128/aem.59.9.2951-2955.19931993
Phylogeny21742820Azospirillum formosense sp. nov., a diazotroph from agricultural soil.Lin SY, Shen FT, Young LS, Zhu ZL, Chen WM, Young CCInt J Syst Evol Microbiol10.1099/ijs.0.030585-02011Azospirillum brasilense/*classification/genetics/*isolation & purification/metabolism, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nitrogen Fixation, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, TaiwanGenetics
Pathogenicity22991739Osmoregulation in Azospirillum brasilense: glycine betaine transport enhances growth and nitrogen fixation under salt stress.Riou N, Le Rudulier DJ Gen Microbiol10.1099/00221287-136-8-14551990Azospirillum brasilense/*drug effects/*metabolism, *Betaine/metabolism/pharmacology, Biological Transport, Kinetics, Nitrogen Fixation/*drug effects, Periplasm/metabolism, Protein Binding, Salts/pharmacology, Stress, Physiological/*drug effects, Water-Electrolyte Balance/*drug effectsMetabolism
Phylogeny23645021Azospirillum fermentarium sp. nov., a nitrogen-fixing species isolated from a fermenter.Lin SY, Liu YC, Hameed A, Hsu YH, Lai WA, Shen FT, Young CCInt J Syst Evol Microbiol10.1099/ijs.0.050872-02013Azospirillum/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Bioreactors/*microbiology, DNA, Bacterial/genetics, Fatty Acids/analysis, *Fermentation, Molecular Sequence Data, Nitrogen Fixation, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Taiwan, Ubiquinone/analysisGenetics
Metabolism28559297Characterization of a Novel cis-3-Hydroxy-l-Proline Dehydratase and a trans-3-Hydroxy-l-Proline Dehydratase from Bacteria.Watanabe S, Fukumori F, Miyazaki M, Tagami S, Watanabe YJ Bacteriol10.1128/JB.00255-172017Azospirillum brasilense/*enzymology/genetics/growth & development/metabolism, Carbon/metabolism, Gene Knockout Techniques, Hydro-Lyases/*isolation & purification/*metabolism, Hydroxyproline/genetics/*metabolism, Multigene Family, Protein Subunits/genetics/metabolism, Transcription, GeneticEnzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
862Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1690)https://www.dsmz.de/collection/catalogue/details/culture/DSM-1690
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
83143Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID7462.1StrainInfo: A central database for resolving microbial strain identifiers