Strain identifier
BacDive ID: 13967
Type strain:
Species: Thalassospira profundimaris
Strain Designation: WPO 211, WP0211
Strain history: CIP <- 2007, DSMZ <- Z. Shao, Marine Biogen. Res., China: strain WP0211
NCBI tax ID(s): 502049 (species)
General
@ref: 6982
BacDive-ID: 13967
DSM-Number: 17430
keywords: 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative, rod-shaped
description: Thalassospira profundimaris WPO 211 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from deep sea sediment sample.
NCBI tax id
- NCBI tax id: 502049
- Matching level: species
strain history
@ref | history |
---|---|
6982 | <- Z. Shao; WPO 211 <- Y. Ma |
121958 | CIP <- 2007, DSMZ <- Z. Shao, Marine Biogen. Res., China: strain WP0211 |
doi: 10.13145/bacdive13967.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Thalassospiraceae
- genus: Thalassospira
- species: Thalassospira profundimaris
- full scientific name: Thalassospira profundimaris Liu et al. 2007
@ref: 6982
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodospirillales
family: Thalassospiraceae
genus: Thalassospira
species: Thalassospira profundimaris
full scientific name: Thalassospira profundimaris Liu et al. 2007
strain designation: WPO 211, WP0211
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility |
---|---|---|---|---|---|
31858 | negative | 1.55 µm | 0.55 µm | rod-shaped | no |
121958 | negative | rod-shaped | yes |
pigmentation
- @ref: 31858
- production: no
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
6982 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | yes | https://mediadive.dsmz.de/medium/514 | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water |
37758 | Marine agar (MA) | yes | Distilled water make up to (1000.000 ml);Marine agar (55.100 g) | |
121958 | CIP Medium 13 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
6982 | positive | growth | 25 | mesophilic |
31858 | positive | growth | 10-37 | |
31858 | positive | optimum | 22 | psychrophilic |
37758 | positive | growth | 25 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 31858
- oxygen tolerance: anaerobe
spore formation
@ref | spore formation |
---|---|
31858 | no |
121958 | no |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
31858 | NaCl | positive | growth | 02-08 % |
31858 | NaCl | positive | optimum | 3.5 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
31858 | 16449 | alanine | + | carbon source |
31858 | 18403 | L-arabitol | + | carbon source |
31858 | 17057 | cellobiose | + | carbon source |
31858 | 15740 | formate | + | carbon source |
31858 | 28757 | fructose | + | carbon source |
31858 | 24175 | galacturonate | + | carbon source |
31858 | 24265 | gluconate | + | carbon source |
31858 | 17234 | glucose | + | carbon source |
31858 | 29987 | glutamate | + | carbon source |
31858 | 17754 | glycerol | + | carbon source |
31858 | 27570 | histidine | + | carbon source |
31858 | 18240 | 4-hydroxy-L-proline | + | carbon source |
31858 | 24996 | lactate | + | carbon source |
31858 | 29864 | mannitol | + | carbon source |
31858 | 37684 | mannose | + | carbon source |
31858 | 51850 | methyl pyruvate | + | carbon source |
31858 | 26271 | proline | + | carbon source |
31858 | 17272 | propionate | + | carbon source |
31858 | 26490 | quinate | + | carbon source |
31858 | 30031 | succinate | + | carbon source |
31858 | 53423 | tween 40 | + | carbon source |
31858 | 53426 | tween 80 | + | carbon source |
31858 | 17632 | nitrate | + | reduction |
68371 | Potassium 5-ketogluconate | - | builds acid from | |
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | 24265 | gluconate | - | builds acid from |
68371 | 18403 | L-arabitol | - | builds acid from |
68371 | 18333 | D-arabitol | - | builds acid from |
68371 | 18287 | L-fucose | - | builds acid from |
68371 | 28847 | D-fucose | - | builds acid from |
68371 | 16443 | D-tagatose | - | builds acid from |
68371 | 62318 | D-lyxose | - | builds acid from |
68371 | 32528 | turanose | - | builds acid from |
68371 | 28066 | gentiobiose | - | builds acid from |
68371 | 17151 | xylitol | - | builds acid from |
68371 | 28087 | glycogen | - | builds acid from |
68371 | 28017 | starch | - | builds acid from |
68371 | 16634 | raffinose | - | builds acid from |
68371 | 6731 | melezitose | - | builds acid from |
68371 | 15443 | inulin | - | builds acid from |
68371 | 27082 | trehalose | - | builds acid from |
68371 | 17992 | sucrose | - | builds acid from |
68371 | 28053 | melibiose | - | builds acid from |
68371 | 17716 | lactose | - | builds acid from |
68371 | 17306 | maltose | - | builds acid from |
68371 | 17814 | salicin | - | builds acid from |
68371 | 4853 | esculin | - | builds acid from |
68371 | 18305 | arbutin | - | builds acid from |
68371 | 27613 | amygdalin | - | builds acid from |
68371 | 59640 | N-acetylglucosamine | - | builds acid from |
68371 | 320061 | methyl alpha-D-glucopyranoside | - | builds acid from |
68371 | 43943 | methyl alpha-D-mannoside | - | builds acid from |
68371 | 17924 | D-sorbitol | - | builds acid from |
68371 | 17268 | myo-inositol | - | builds acid from |
68371 | 16813 | galactitol | - | builds acid from |
68371 | 62345 | L-rhamnose | - | builds acid from |
68371 | 17266 | L-sorbose | - | builds acid from |
68371 | 74863 | methyl beta-D-xylopyranoside | - | builds acid from |
68371 | 15963 | ribitol | - | builds acid from |
68371 | 65328 | L-xylose | - | builds acid from |
68371 | 16988 | D-ribose | - | builds acid from |
68371 | 17108 | D-arabinose | - | builds acid from |
68371 | 17113 | erythritol | - | builds acid from |
121958 | 17632 | nitrate | - | reduction |
121958 | 16301 | nitrite | - | reduction |
metabolite production
- @ref: 121958
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
31858 | catalase | + | 1.11.1.6 |
31858 | cytochrome oxidase | + | 1.9.3.1 |
121958 | oxidase | + | |
121958 | catalase | + | 1.11.1.6 |
121958 | urease | + | 3.5.1.5 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | - | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | + | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
121958 | - | + | + | - | - | + | + | - | - | - | + | + | - | - | - | - | - | - | - | - |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
121958 | +/- | - | - | +/- | - | +/- | - | - | - | +/- | +/- | +/- | +/- | - | - | - | - | +/- | - | - | - | - | - | - | - | - | +/- | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | sampling date | country |
---|---|---|---|---|
6982 | deep sea sediment sample | West Pacific | ||
121958 | Environment, Deep sea, sediment sample, collected by a multi-core sampler from the West Pacific (region 973, station WP02-3, water depth 4480 m) during cruise DY105-13 of the vessel HAIYANG Number 4 in 2002 | 2002 | Pacific Ocean |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Marine |
#Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_884.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_88;96_222;97_242;98_271;99_884&stattab=map
- Last taxonomy: Thalassospira
- 16S sequence: AY186195
- Sequence Identity:
- Total samples: 8726
- soil counts: 540
- aquatic counts: 7649
- animal counts: 378
- plant counts: 159
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
6982 | 1 | Risk group (German classification) |
121958 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 6982
- description: Thalassospira profundimaris strain WP0211 16S ribosomal RNA gene, partial sequence
- accession: AY186195
- length: 1457
- database: ena
- NCBI tax ID: 1177928
GC content
- @ref: 6982
- GC-content: 47
External links
@ref: 6982
culture collection no.: DSM 17430, CGMCC 1.3997, CIP 109532
straininfo link
- @ref: 83139
- straininfo: 297360
literature
- topic: Phylogeny
- Pubmed-ID: 17267971
- title: Thalassospira xiamenensis sp. nov. and Thalassospira profundimaris sp. nov.
- authors: Liu C, Wu Y, Li L, Ma Y, Shao Z
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.64544-0
- year: 2007
- mesh: Bacterial Typing Techniques, Carbohydrate Metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis/chemistry, Flagella, Genes, rRNA, Geologic Sediments/*microbiology, Molecular Sequence Data, Movement, Nitrates/metabolism, Oxidation-Reduction, Pacific Ocean, Phylogeny, Polysorbates, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Rhodospirillaceae/*classification/genetics/*isolation & purification/physiology, Seawater/*microbiology, Sequence Analysis, DNA, Temperature
- topic2: Metabolism
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
6982 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17430) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17430 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
31858 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28121 | 28776041 | |
37758 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/7286 | ||||
68371 | Automatically annotated from API 50CH acid | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
83139 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID297360.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
121958 | Curators of the CIP | Collection of Institut Pasteur (CIP 109532) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109532 |