Strain identifier

BacDive ID: 13967

Type strain: Yes

Species: Thalassospira profundimaris

Strain Designation: WPO 211, WP0211

Strain history: CIP <- 2007, DSMZ <- Z. Shao, Marine Biogen. Res., China: strain WP0211

NCBI tax ID(s): 502049 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 6982

BacDive-ID: 13967

DSM-Number: 17430

keywords: 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative, rod-shaped

description: Thalassospira profundimaris WPO 211 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from deep sea sediment sample.

NCBI tax id

  • NCBI tax id: 502049
  • Matching level: species

strain history

@refhistory
6982<- Z. Shao; WPO 211 <- Y. Ma
121958CIP <- 2007, DSMZ <- Z. Shao, Marine Biogen. Res., China: strain WP0211

doi: 10.13145/bacdive13967.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Thalassospiraceae
  • genus: Thalassospira
  • species: Thalassospira profundimaris
  • full scientific name: Thalassospira profundimaris Liu et al. 2007

@ref: 6982

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodospirillales

family: Thalassospiraceae

genus: Thalassospira

species: Thalassospira profundimaris

full scientific name: Thalassospira profundimaris Liu et al. 2007

strain designation: WPO 211, WP0211

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
31858negative1.55 µm0.55 µmrod-shapedno
121958negativerod-shapedyes

pigmentation

  • @ref: 31858
  • production: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6982BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
37758Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
121958CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
6982positivegrowth25mesophilic
31858positivegrowth10-37
31858positiveoptimum22psychrophilic
37758positivegrowth25mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 31858
  • oxygen tolerance: anaerobe

spore formation

@refspore formation
31858no
121958no

halophily

@refsaltgrowthtested relationconcentration
31858NaClpositivegrowth02-08 %
31858NaClpositiveoptimum3.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3185816449alanine+carbon source
3185818403L-arabitol+carbon source
3185817057cellobiose+carbon source
3185815740formate+carbon source
3185828757fructose+carbon source
3185824175galacturonate+carbon source
3185824265gluconate+carbon source
3185817234glucose+carbon source
3185829987glutamate+carbon source
3185817754glycerol+carbon source
3185827570histidine+carbon source
31858182404-hydroxy-L-proline+carbon source
3185824996lactate+carbon source
3185829864mannitol+carbon source
3185837684mannose+carbon source
3185851850methyl pyruvate+carbon source
3185826271proline+carbon source
3185817272propionate+carbon source
3185826490quinate+carbon source
3185830031succinate+carbon source
3185853423tween 40+carbon source
3185853426tween 80+carbon source
3185817632nitrate+reduction
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose-builds acid from
6837117814salicin-builds acid from
683714853esculin-builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
6837159640N-acetylglucosamine-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837116988D-ribose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
12195817632nitrate-reduction
12195816301nitrite-reduction

metabolite production

  • @ref: 121958
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
31858catalase+1.11.1.6
31858cytochrome oxidase+1.9.3.1
121958oxidase+
121958catalase+1.11.1.6
121958urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
121958-++--++---++--------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
121958+/---+/--+/----+/-+/-+/-+/-----+/---------+/-----------------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationsampling datecountry
6982deep sea sediment sampleWest Pacific
121958Environment, Deep sea, sediment sample, collected by a multi-core sampler from the West Pacific (region 973, station WP02-3, water depth 4480 m) during cruise DY105-13 of the vessel HAIYANG Number 4 in 20022002Pacific Ocean

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_884.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_88;96_222;97_242;98_271;99_884&stattab=map
  • Last taxonomy: Thalassospira
  • 16S sequence: AY186195
  • Sequence Identity:
  • Total samples: 8726
  • soil counts: 540
  • aquatic counts: 7649
  • animal counts: 378
  • plant counts: 159

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
69821Risk group (German classification)
1219581Risk group (French classification)

Sequence information

16S sequences

  • @ref: 6982
  • description: Thalassospira profundimaris strain WP0211 16S ribosomal RNA gene, partial sequence
  • accession: AY186195
  • length: 1457
  • database: ena
  • NCBI tax ID: 1177928

GC content

  • @ref: 6982
  • GC-content: 47

External links

@ref: 6982

culture collection no.: DSM 17430, CGMCC 1.3997, CIP 109532

straininfo link

  • @ref: 83139
  • straininfo: 297360

literature

  • topic: Phylogeny
  • Pubmed-ID: 17267971
  • title: Thalassospira xiamenensis sp. nov. and Thalassospira profundimaris sp. nov.
  • authors: Liu C, Wu Y, Li L, Ma Y, Shao Z
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.64544-0
  • year: 2007
  • mesh: Bacterial Typing Techniques, Carbohydrate Metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis/chemistry, Flagella, Genes, rRNA, Geologic Sediments/*microbiology, Molecular Sequence Data, Movement, Nitrates/metabolism, Oxidation-Reduction, Pacific Ocean, Phylogeny, Polysorbates, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Rhodospirillaceae/*classification/genetics/*isolation & purification/physiology, Seawater/*microbiology, Sequence Analysis, DNA, Temperature
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
6982Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17430)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17430
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31858Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2812128776041
37758Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7286
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
83139Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID297360.1StrainInfo: A central database for resolving microbial strain identifiers
121958Curators of the CIPCollection of Institut Pasteur (CIP 109532)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109532