Strain identifier
BacDive ID: 139656
Type strain: 
Species: Shewanella violacea
Strain history: Y. Nogi DSS12.
NCBI tax ID(s): 637905 (strain), 60217 (species)
version 7.1 (current version)
General
@ref: 42242
BacDive-ID: 139656
keywords: 16S sequence, Bacteria, psychrophilic
description: Shewanella violacea CIP 106290 is a psychrophilic bacterium of the family Shewanellaceae.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 60217 | species |
| 637905 | strain |
strain history: Y. Nogi DSS12.
doi: 10.13145/bacdive139656.20221219.7.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Shewanellaceae
- genus: Shewanella
- species: Shewanella violacea
- full scientific name: Shewanella violacea Nogi et al. 1999
@ref: 42242
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Shewanellaceae
genus: Shewanella
species: Shewanella violacea
type strain: yes
Culture and growth conditions
culture medium
- @ref: 42242
- name: Marine agar (MA)
- growth: yes
- composition: Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 42242 | positive | growth | 4 | psychrophilic |
| 67770 | positive | growth | 4 | psychrophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: Q-8 (Q-7)
Isolation, sampling and environmental information
isolation
| @ref | country | origin.country | continent | sample type | geographic location |
|---|---|---|---|---|---|
| 42242 | Japan | JPN | Asia | ||
| 67770 | Pacific Ocean | Marine sediment at a depth of 5,110 m | Ryukyu Trench |
taxonmaps
- @ref: 69479
- File name: preview.99_2830.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_59;96_759;97_1185;98_1416;99_2830&stattab=map
- Last taxonomy: Shewanella violacea
- 16S sequence: D21225
- Sequence Identity:
- Total samples: 313
- soil counts: 31
- aquatic counts: 253
- animal counts: 29
Sequence information
16S sequences
- @ref: 67770
- description: Shewanella violacea gene for 16S rRNA, partial sequence
- accession: D21225
- length: 1506
- database: ena
- NCBI tax ID: 637905
GC content
- @ref: 67770
- GC-content: 47
- method: high performance liquid chromatography (HPLC)
External links
@ref: 42242
culture collection no.: CIP 106290, JCM 10179, LMG 19151
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/49951 |
| 20218 | http://www.straininfo.net/strains/49952 |
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 9818352 | Taxonomic studies of deep-sea barophilic Shewanella strains and description of Shewanella violacea sp. nov. | Nogi Y, Kato C, Horikoshi K | Arch Microbiol | 10.1007/s002030050650 | 1998 | Bacteria, Anaerobic/*classification/growth & development/isolation & purification/ultrastructure, Base Sequence, DNA, Bacterial/analysis, Geologic Sediments/microbiology, Microscopy, Electron, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/analysis, Seawater/*microbiology, Temperature, *Water Microbiology | Genetics |
| Phylogeny | 17220442 | Shewanella psychrophila sp. nov. and Shewanella piezotolerans sp. nov., isolated from west Pacific deep-sea sediment. | Xiao X, Wang P, Zeng X, Bartlett DH, Wang F | Int J Syst Evol Microbiol | 10.1099/ijs.0.64500-0 | 2007 | Bacterial Typing Techniques, China, Cold Temperature, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Shewanella/*classification/genetics/isolation & purification/physiology | Genetics |
Reference
| @id | authors | title | doi/url | journal | pubmed | catalogue |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | StrainInfo introduces electronic passports for microorganisms. | 10.1016/j.syapm.2013.11.002 | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 42242 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/18404 | Collection of Institut Pasteur (CIP 106290) | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |