We are hiring!

Strain identifier

BacDive ID: 139656

Type strain: Yes

Species: Shewanella violacea

Strain history: Y. Nogi DSS12.

NCBI tax ID(s): 637905 (strain), 60217 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 7.1 (current version):
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 7.1 (current version)

General

@ref: 42242

BacDive-ID: 139656

keywords: 16S sequence, Bacteria, psychrophilic

description: Shewanella violacea CIP 106290 is a psychrophilic bacterium of the family Shewanellaceae.

NCBI tax id

NCBI tax idMatching level
60217species
637905strain

strain history: Y. Nogi DSS12.

doi: 10.13145/bacdive139656.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Alteromonadales
  • family: Shewanellaceae
  • genus: Shewanella
  • species: Shewanella violacea
  • full scientific name: Shewanella violacea Nogi et al. 1999

@ref: 42242

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Alteromonadales

family: Shewanellaceae

genus: Shewanella

species: Shewanella violacea

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 42242
  • name: Marine agar (MA)
  • growth: yes
  • composition: Distilled water make up to (1000.000 ml);Marine agar (55.100 g)

culture temp

@refgrowthtypetemperaturerange
42242positivegrowth4psychrophilic
67770positivegrowth4psychrophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: Q-8 (Q-7)

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample typegeographic location
42242JapanJPNAsia
67770Pacific OceanMarine sediment at a depth of 5,110 mRyukyu Trench

taxonmaps

  • @ref: 69479
  • File name: preview.99_2830.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_59;96_759;97_1185;98_1416;99_2830&stattab=map
  • Last taxonomy: Shewanella violacea
  • 16S sequence: D21225
  • Sequence Identity:
  • Total samples: 313
  • soil counts: 31
  • aquatic counts: 253
  • animal counts: 29

Sequence information

16S sequences

  • @ref: 67770
  • description: Shewanella violacea gene for 16S rRNA, partial sequence
  • accession: D21225
  • length: 1506
  • database: ena
  • NCBI tax ID: 637905

GC content

  • @ref: 67770
  • GC-content: 47
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 42242

culture collection no.: CIP 106290, JCM 10179, LMG 19151

straininfo link

@refpassport
20218http://www.straininfo.net/strains/49951
20218http://www.straininfo.net/strains/49952

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny9818352Taxonomic studies of deep-sea barophilic Shewanella strains and description of Shewanella violacea sp. nov.Nogi Y, Kato C, Horikoshi KArch Microbiol10.1007/s0020300506501998Bacteria, Anaerobic/*classification/growth & development/isolation & purification/ultrastructure, Base Sequence, DNA, Bacterial/analysis, Geologic Sediments/microbiology, Microscopy, Electron, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/analysis, Seawater/*microbiology, Temperature, *Water MicrobiologyGenetics
Phylogeny17220442Shewanella psychrophila sp. nov. and Shewanella piezotolerans sp. nov., isolated from west Pacific deep-sea sediment.Xiao X, Wang P, Zeng X, Bartlett DH, Wang FInt J Syst Evol Microbiol10.1099/ijs.0.64500-02007Bacterial Typing Techniques, China, Cold Temperature, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Shewanella/*classification/genetics/isolation & purification/physiologyGenetics

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
42242Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18404 Collection of Institut Pasteur (CIP 106290)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/