Strain identifier

BacDive ID: 139608

Type strain: No

Species: Acinetobacter sp.

Strain history: CIP <- 1956, L. Second, Lab. Ident. Inst. Pasteur, Paris, France, Moraxella lwoffi var. liquefaciens

NCBI tax ID(s): 472 (species)

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General

@ref: 42139

BacDive-ID: 139608

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative

description: Acinetobacter sp. CIP 56.2 is an obligate aerobe, mesophilic, Gram-negative bacterium of the family Moraxellaceae.

NCBI tax id

  • NCBI tax id: 472
  • Matching level: species

strain history

@refhistory
421391956, L. Second, Lab. Ident. Inst. Pasteur, Paris, France, Moraxella lwoffi var. liquefaciens
42139CIP <- 1956, L. Second, Lab. Ident. Inst. Pasteur, Paris, France, Moraxella lwoffi var. liquefaciens

doi: 10.13145/bacdive139608.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Acinetobacter
  • species: Acinetobacter sp.
  • full scientific name: Acinetobacter Brisou and Prévot 1954 (Approved Lists 1980)

@ref: 42139

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Acinetobacter

species: Acinetobacter sp.

type strain: no

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
125438negative97.5
42139negativerod-shapedno

colony morphology

  • @ref: 42139
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
42139MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
42139CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperature
42139positivegrowth30
42139positivegrowth10-37
42139nogrowth41
42139nogrowth45

Physiology and metabolism

oxygen tolerance

  • @ref: 42139
  • oxygen tolerance: obligate aerobe

spore formation

@refspore formationconfidence
125438no96.195
125439no91

halophily

@refsaltgrowthtested relationconcentration
42139NaClpositivegrowth0-2 %
42139NaClnogrowth6 %
42139NaClnogrowth8 %
42139NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4213916947citrate+carbon source
4213917632nitrate-reduction
4213916301nitrite-reduction
4213917632nitrate-respiration

antibiotic resistance

  • @ref: 42139
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 42139
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
4213915688acetoin-
4213917234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase+3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)+
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
42139oxidase-
42139beta-galactosidase-3.2.1.23
42139gelatinase+
42139catalase+1.11.1.6
42139gamma-glutamyltransferase-2.3.2.2
42139urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
42139-+++++++--++--------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
42139------------------------------------------------++---+--------++-+-+-----+-+++-++----+----++++--++-

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
42139RoanneFranceFRAEurope
42139RoanneFranceFRAEuropeHuman, Liver abscess1955

Safety information

risk assessment

  • @ref: 42139
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
124043Acinetobacter sp. CIP 56.2 16S ribosomal RNA gene, partial sequence.JQ6385851503nuccore70347
124043Acinetobacter sp. strain ANC 4585 = CIP 56.2 16S ribosomal RNA gene, partial sequence.OR3505061538nuccore472

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acinetobacter sp. CIP 56.2GCA_000368445scaffoldncbi1144672
66792Acinetobacter sp. CIP 56.21144672.3wgspatric1144672
66792Acinetobacter sp. CIP 56.22565956668draftimg1144672

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthaerobe86.4
125439BacteriaNetgram_stainReaction to gram-stainingnegative69.5
125439BacteriaNetmotilityAbility to perform movementno56.2
125439BacteriaNetspore_formationAbility to form endo- or exosporesno91
125438gram-positivegram-positivePositive reaction to Gram-stainingno97.5no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no97.278yes
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes89.782yes
125438spore-formingspore-formingAbility to form endo- or exosporesno96.195no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno98.5no
125438motile2+flagellatedAbility to perform flagellated movementno71.822no

External links

@ref: 42139

culture collection no.: CIP 56.2

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
42139Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2056.2Collection of Institut Pasteur (CIP 56.2)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68382Automatically annotated from API zym
124043Isabel Schober, Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG