Strain identifier
BacDive ID: 13958
Type strain: 
Species: Rhodovibrio salinarum
Strain history: <- ATCC <- H. Nissen <- I. Dundas
NCBI tax ID(s): 1089552 (strain), 1087 (species)
version 8.1 (current version)
General
@ref: 3490
BacDive-ID: 13958
DSM-Number: 9154
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, motile
description: Rhodovibrio salinarum DSM 9154 is an anaerobe, mesophilic, motile bacterium of the family Rhodovibrionaceae.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1087 | species |
| 1089552 | strain |
strain history
- @ref: 3490
- history: <- ATCC <- H. Nissen <- I. Dundas
doi: 10.13145/bacdive13958.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Rhodovibrionaceae
- genus: Rhodovibrio
- species: Rhodovibrio salinarum
- full scientific name: Rhodovibrio salinarum (Nissen and Dundas 1985) Imhoff et al. 1998
synonyms
- @ref: 20215
- synonym: Rhodospirillum salinarum
@ref: 3490
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodospirillales
family: Rhodovibrionaceae
genus: Rhodovibrio
species: Rhodovibrio salinarum
full scientific name: Rhodovibrio salinarum (Nissen and Dundas 1985) Imhoff et al. 1998
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 96.702 | |
| 69480 | 99.999 | negative |
Culture and growth conditions
culture medium
- @ref: 3490
- name: HALOPHILE MEDIUM (DSMZ Medium 652)
- growth: yes
- link: https://mediadive.dsmz.de/medium/652
- composition: Name: HALOPHILE MEDIUM (DSMZ Medium 652) Composition: NaCl 100.0 g/l MgSO4 x 7 H2O 5.0 g/l KCl 5.0 g/l MgCl2 x 6 H2O 5.0 g/l NH4Cl 5.0 g/l Peptone 5.0 g/l Yeast extract 5.0 g/l Fe(III) citrate 0.05 g/l ZnSO4 x 7 H2O 0.0011 g/l MnCl2 x 4 H2O 0.0009 g/l CoCl2 x 6 H2O 5e-05 g/l Na2MoO4 x H2O 3.15e-05 g/l CuSO4 x 5 H2O 5e-06 g/l Distilled water
culture temp
- @ref: 3490
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 3490
- oxygen tolerance: anaerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.999 |
Isolation, sampling and environmental information
isolation
- @ref: 3490
- geographic location: Saltern
- country: Portugal
- origin.country: PRT
- continent: Europe
Safety information
risk assessment
- @ref: 3490
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Rhodospirillum salinarum 16S ribosomal RNA | M59069 | 1439 | ena | 1087 |
| 20218 | Rhodovibrio salinarum 16S rRNA | D14432 | 1404 | ena | 1087 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Rhodovibrio salinarum DSM 9154 | GCA_000515255 | scaffold | ncbi | 1089552 |
| 66792 | Rhodovibrio salinarum DSM 9154 | GCA_016583505 | scaffold | ncbi | 1087 |
| 66792 | Rhodovibrio salinarum DSM 9154 | 1089552.3 | wgs | patric | 1089552 |
| 66792 | Rhodovibrio salinarum strain DSM 9154 | 1087.7 | wgs | patric | 1087 |
| 66792 | Rhodovibrio salinarum DSM 9154 | 2516653055 | draft | img | 1089552 |
GC content
- @ref: 3490
- GC-content: 68.1
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 92.71 | no |
| flagellated | yes | 63.126 | no |
| gram-positive | no | 98.536 | no |
| anaerobic | no | 74.427 | yes |
| halophile | yes | 64.468 | no |
| spore-forming | no | 92.773 | no |
| thermophile | no | 93.151 | yes |
| glucose-util | yes | 89.787 | no |
| aerobic | no | 60.433 | yes |
| glucose-ferment | no | 90.025 | no |
External links
@ref: 3490
culture collection no.: DSM 9154, ATCC 35394
straininfo link
- @ref: 83130
- straininfo: 41053
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 3490 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9154) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-9154 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 83130 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID41053.1 | StrainInfo: A central database for resolving microbial strain identifiers |