Strain identifier

BacDive ID: 139551

Type strain: No

Species: Pseudoglutamicibacter cumminsii

Strain Designation: B51561

Strain history: CIP <- 1998, CCUG <- B.M. Ellis, PHLS, Karlskrona, Sweden: strain B51561

NCBI tax ID(s): 156979 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 41921

BacDive-ID: 139551

keywords: Bacteria, aerobe, mesophilic, Gram-positive, rod-shaped

description: Pseudoglutamicibacter cumminsii B51561 is an aerobe, mesophilic, Gram-positive bacterium of the family Micrococcaceae.

NCBI tax id

  • NCBI tax id: 156979
  • Matching level: species

strain history

  • @ref: 41921
  • history: CIP <- 1998, CCUG <- B.M. Ellis, PHLS, Karlskrona, Sweden: strain B51561

doi: 10.13145/bacdive139551.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Micrococcaceae
  • genus: Pseudoglutamicibacter
  • species: Pseudoglutamicibacter cumminsii
  • full scientific name: Pseudoglutamicibacter cumminsii (Funke et al. 1997) Busse 2016
  • synonyms

    • @ref: 20215
    • synonym: Arthrobacter cumminsii

@ref: 41921

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Micrococcales

family: Micrococcaceae

genus: Pseudoglutamicibacter

species: Pseudoglutamicibacter cumminsii

strain designation: B51561

type strain: no

Morphology

cell morphology

  • @ref: 41921
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

colony morphology

@refincubation period
526191 day
41921

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
41921MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
41921CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
41921positivegrowth37mesophilic
52619positivegrowth30-37mesophilic
41921positivegrowth25-41
41921nogrowth10psychrophilic
41921nogrowth15psychrophilic
41921nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
52619aerobe
41921obligate aerobe

halophily

  • @ref: 41921
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose-builds acid from16024
68371D-fructose-builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
68368L-arabinose-fermentation30849
68368amygdalin-fermentation27613
68368melibiose-fermentation28053
68368sucrose-fermentation17992
68368L-rhamnose-fermentation62345
68368sorbitol-fermentation30911
68368myo-inositol-fermentation17268
68368D-mannitol-fermentation16899
68368D-glucose-fermentation17634
68368gelatin-hydrolysis5291
68368tryptophan-energy source27897
68368urea+hydrolysis16199
68368citrate-assimilation16947
68368ornithine-degradation18257
68368lysine-degradation25094
68368arginine-hydrolysis29016
41921citrate-carbon source16947
41921esculin-hydrolysis4853
41921hippurate+hydrolysis606565
41921nitrate-reduction17632
41921nitrite-reduction16301
41921nitrate-respiration17632
68379nitrate-reduction17632
68379esculin-hydrolysis4853
68379urea+hydrolysis16199
68379gelatin+hydrolysis5291
68379D-glucose-fermentation17634
68379D-ribose-fermentation16988
68379D-xylose-fermentation65327
68379D-mannitol-fermentation16899
68379maltose-fermentation17306
68379lactose-fermentation17716
68379sucrose-fermentation17992
68379glycogen-fermentation28087

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno
4192135581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole testmethylred-test
6836815688acetoin+
6836835581indole-
4192115688acetoin-
4192117234glucose-

enzymes

@refvalueactivityec
68379catalase+1.11.1.6
68379gelatinase+
68379urease+3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase+3.4.19.3
68379pyrazinamidase+3.5.1.B15
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23
41921oxidase+
41921beta-galactosidase-3.2.1.23
41921alcohol dehydrogenase-1.1.1.1
41921gelatinase+/-
41921amylase-
41921DNase-
41921caseinase+3.4.21.50
41921catalase+1.11.1.6
41921tween esterase-
41921gamma-glutamyltransferase-2.3.2.2
41921lecithinase-
41921lipase-
41921lysine decarboxylase-4.1.1.18
41921ornithine decarboxylase-4.1.1.17
41921phenylalanine ammonia-lyase-4.3.1.24
41921protease+
41921tryptophan deaminase-
41921urease+3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    52619C14:00.514
    52619C16:03.416
    52619C18:0118
    52619C13:0 ANTEISO0.512.701
    52619C14:0 ISO2.713.618
    52619C15:0 ANTEISO50.514.711
    52619C15:0 ISO3.214.621
    52619C16:0 iso15.915.626
    52619C17:0 anteiso14.316.722
    52619C17:0 iso0.516.629
    52619C18:1 ω9c417.769
    52619C18:2 ω6,9c/C18:0 ANTE3.617.724
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYGCAT
52619-+++-----++---------+

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
52619--++----------------
52619--++-+--------------
41921--++-+----++--------

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
52619------+--+-----------

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
52619-----------+--------------------------------------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
41921-------------------------------------------------------------++---+--+--+--+--------------++--+----

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typesampling date
41921KarlskronaSwedenSWEEurope
52619KarlskronaSwedenSWEEuropeHuman blood,83-yr-old man1995-12-01
41921KarlskronaSwedenSWEEuropeHuman, Blood

isolation source categories

Cat1Cat2Cat3
#Host#Human#Male
#Host Body Product#Fluids#Blood

Safety information

risk assessment

  • @ref: 41921
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 41921

culture collection no.: CIP 105582, CCUG 35241

straininfo link

  • @ref: 96031
  • straininfo: 51712

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
41921Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105582Collection of Institut Pasteur (CIP 105582)
52619Curators of the CCUGhttps://www.ccug.se/strain?id=35241Culture Collection University of Gothenburg (CCUG) (CCUG 35241)
68368Automatically annotated from API 20E
68371Automatically annotated from API 50CH acid
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
96031Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID51712.1