Strain identifier

BacDive ID: 139550

Type strain: No

Species: Pseudoglutamicibacter cumminsii

Strain Designation: U21003

Strain history: CIP <- 1998, CCUG <- 1991, A.C. Yemane, PHLS, Huddinge, Sweden: strain U21003

NCBI tax ID(s): 156979 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 41920

BacDive-ID: 139550

keywords: Bacteria, obligate aerobe, mesophilic, Gram-positive, rod-shaped

description: Pseudoglutamicibacter cumminsii U21003 is an obligate aerobe, mesophilic, Gram-positive bacterium of the family Micrococcaceae.

NCBI tax id

  • NCBI tax id: 156979
  • Matching level: species

strain history

  • @ref: 41920
  • history: CIP <- 1998, CCUG <- 1991, A.C. Yemane, PHLS, Huddinge, Sweden: strain U21003

doi: 10.13145/bacdive139550.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Micrococcaceae
  • genus: Pseudoglutamicibacter
  • species: Pseudoglutamicibacter cumminsii
  • full scientific name: Pseudoglutamicibacter cumminsii (Funke et al. 1997) Busse 2016
  • synonyms

    • @ref: 20215
    • synonym: Arthrobacter cumminsii

@ref: 41920

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Micrococcales

family: Micrococcaceae

genus: Pseudoglutamicibacter

species: Pseudoglutamicibacter cumminsii

strain designation: U21003

type strain: no

Morphology

cell morphology

  • @ref: 41920
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 41920

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
41920MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
41920CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
41920positivegrowth37mesophilic
41920positivegrowth30-41
41920nogrowth10psychrophilic
41920nogrowth15psychrophilic
41920nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 41920
  • oxygen tolerance: obligate aerobe

halophily

  • @ref: 41920
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4192016947citrate-carbon source
419204853esculin-hydrolysis
41920606565hippurate-hydrolysis
4192017632nitrate-reduction
4192016301nitrite-reduction
4192017632nitrate-respiration
6837917632nitrate-reduction
683794853esculin-hydrolysis
6837916199urea-hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

metabolite production

  • @ref: 41920
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
4192015688acetoin-
4192017234glucose-

enzymes

@refvalueactivityec
68379catalase+1.11.1.6
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase+3.4.19.3
68379pyrazinamidase+3.5.1.B15
41920oxidase+
41920beta-galactosidase+3.2.1.23
41920alcohol dehydrogenase-1.1.1.1
41920gelatinase+/-
41920amylase-
41920DNase-
41920caseinase+3.4.21.50
41920catalase+1.11.1.6
41920tween esterase-
41920gamma-glutamyltransferase-2.3.2.2
41920lecithinase-
41920lipase-
41920lysine decarboxylase-4.1.1.18
41920ornithine decarboxylase-4.1.1.17
41920phenylalanine ammonia-lyase-4.3.1.24
41920protease+
41920tryptophan deaminase-
41920urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    49390C14:01.114
    49390C16:02.816
    49390C13:0 ANTEISO2.612.701
    49390C14:0 ISO6.713.618
    49390C15:0 ANTEISO53.514.711
    49390C15:0 ISO3.914.621
    49390C16:0 iso18.215.626
    49390C17:0 anteiso9.516.722
    49390C18:2 ω6,9c/C18:0 ANTE1.917.724
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYGCAT
49390-+++----------------+

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
41920--++-+----++--------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
41920-------------------------------------------------------------+-+--+--+--+--+-------------+++--+----

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typesampling date
41920HuddingeSwedenSWEEurope
49390HuddingeSwedenSWEEuropeHuman,70-yr-old patient1991-07-23
41920HuddingeSwedenSWEEuropeHuman

isolation source categories

Cat1Cat2
#Host#Human
#Infection#Patient

Safety information

risk assessment

  • @ref: 41920
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

External links

@ref: 41920

culture collection no.: CIP 105581, CCUG 28802

straininfo link

  • @ref: 96030
  • straininfo: 51710

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
41920Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105581Collection of Institut Pasteur (CIP 105581)
49390Curators of the CCUGhttps://www.ccug.se/strain?id=28802Culture Collection University of Gothenburg (CCUG) (CCUG 28802)
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
96030Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID51710.1