Strain identifier
BacDive ID: 139550
Type strain:
Species: Pseudoglutamicibacter cumminsii
Strain Designation: U21003
Strain history: CIP <- 1998, CCUG <- 1991, A.C. Yemane, PHLS, Huddinge, Sweden: strain U21003
NCBI tax ID(s): 156979 (species)
General
@ref: 41920
BacDive-ID: 139550
keywords: Bacteria, obligate aerobe, mesophilic, Gram-positive, rod-shaped
description: Pseudoglutamicibacter cumminsii U21003 is an obligate aerobe, mesophilic, Gram-positive bacterium of the family Micrococcaceae.
NCBI tax id
- NCBI tax id: 156979
- Matching level: species
strain history
- @ref: 41920
- history: CIP <- 1998, CCUG <- 1991, A.C. Yemane, PHLS, Huddinge, Sweden: strain U21003
doi: 10.13145/bacdive139550.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Micrococcaceae
- genus: Pseudoglutamicibacter
- species: Pseudoglutamicibacter cumminsii
- full scientific name: Pseudoglutamicibacter cumminsii (Funke et al. 1997) Busse 2016
synonyms
- @ref: 20215
- synonym: Arthrobacter cumminsii
@ref: 41920
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Micrococcales
family: Micrococcaceae
genus: Pseudoglutamicibacter
species: Pseudoglutamicibacter cumminsii
strain designation: U21003
type strain: no
Morphology
cell morphology
- @ref: 41920
- gram stain: positive
- cell shape: rod-shaped
- motility: no
colony morphology
- @ref: 41920
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
41920 | MEDIUM 6 - Columbia agar with 10 % horse blood | yes | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml) | |
41920 | CIP Medium 6 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
41920 | positive | growth | 37 | mesophilic |
41920 | positive | growth | 30-41 | |
41920 | no | growth | 10 | psychrophilic |
41920 | no | growth | 15 | psychrophilic |
41920 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 41920
- oxygen tolerance: obligate aerobe
halophily
- @ref: 41920
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-10 %
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
41920 | 16947 | citrate | - | carbon source |
41920 | 4853 | esculin | - | hydrolysis |
41920 | 606565 | hippurate | - | hydrolysis |
41920 | 17632 | nitrate | - | reduction |
41920 | 16301 | nitrite | - | reduction |
41920 | 17632 | nitrate | - | respiration |
68379 | 17632 | nitrate | - | reduction |
68379 | 4853 | esculin | - | hydrolysis |
68379 | 16199 | urea | - | hydrolysis |
68379 | 5291 | gelatin | - | hydrolysis |
68379 | 17634 | D-glucose | - | fermentation |
68379 | 16988 | D-ribose | - | fermentation |
68379 | 65327 | D-xylose | - | fermentation |
68379 | 16899 | D-mannitol | - | fermentation |
68379 | 17306 | maltose | - | fermentation |
68379 | 17716 | lactose | - | fermentation |
68379 | 17992 | sucrose | - | fermentation |
68379 | 28087 | glycogen | - | fermentation |
metabolite production
- @ref: 41920
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | methylred-test |
---|---|---|---|---|
41920 | 15688 | acetoin | - | |
41920 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68379 | catalase | + | 1.11.1.6 |
68379 | gelatinase | - | |
68379 | urease | - | 3.5.1.5 |
68379 | beta-glucosidase | - | 3.2.1.21 |
68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68379 | alpha-glucosidase | - | 3.2.1.20 |
68379 | beta-galactosidase | - | 3.2.1.23 |
68379 | beta-glucuronidase | - | 3.2.1.31 |
68379 | alkaline phosphatase | + | 3.1.3.1 |
68379 | pyrrolidonyl arylamidase | + | 3.4.19.3 |
68379 | pyrazinamidase | + | 3.5.1.B15 |
41920 | oxidase | + | |
41920 | beta-galactosidase | + | 3.2.1.23 |
41920 | alcohol dehydrogenase | - | 1.1.1.1 |
41920 | gelatinase | +/- | |
41920 | amylase | - | |
41920 | DNase | - | |
41920 | caseinase | + | 3.4.21.50 |
41920 | catalase | + | 1.11.1.6 |
41920 | tween esterase | - | |
41920 | gamma-glutamyltransferase | - | 2.3.2.2 |
41920 | lecithinase | - | |
41920 | lipase | - | |
41920 | lysine decarboxylase | - | 4.1.1.18 |
41920 | ornithine decarboxylase | - | 4.1.1.17 |
41920 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
41920 | protease | + | |
41920 | tryptophan deaminase | - | |
41920 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | - | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 49390 C14:0 1.1 14 49390 C16:0 2.8 16 49390 C13:0 ANTEISO 2.6 12.701 49390 C14:0 ISO 6.7 13.618 49390 C15:0 ANTEISO 53.5 14.711 49390 C15:0 ISO 3.9 14.621 49390 C16:0 iso 18.2 15.626 49390 C17:0 anteiso 9.5 16.722 49390 C18:2 ω6,9c/C18:0 ANTE 1.9 17.724 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API coryne
@ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | Control | GLU | RIB | XYL | MAN | MAL | LAC | SAC | GLYG | CAT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
49390 | - | + | + | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
41920 | - | - | + | + | - | + | - | - | - | - | + | + | - | - | - | - | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
41920 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | + | - | - | + | - | - | + | - | - | + | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | + | + | + | - | - | + | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | geographic location | country | origin.country | continent | sample type | sampling date |
---|---|---|---|---|---|---|
41920 | Huddinge | Sweden | SWE | Europe | ||
49390 | Huddinge | Sweden | SWE | Europe | Human,70-yr-old patient | 1991-07-23 |
41920 | Huddinge | Sweden | SWE | Europe | Human |
isolation source categories
Cat1 | Cat2 |
---|---|
#Host | #Human |
#Infection | #Patient |
Safety information
risk assessment
- @ref: 41920
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
External links
@ref: 41920
culture collection no.: CIP 105581, CCUG 28802
straininfo link
- @ref: 96030
- straininfo: 51710
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
41920 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105581 | Collection of Institut Pasteur (CIP 105581) | |
49390 | Curators of the CCUG | https://www.ccug.se/strain?id=28802 | Culture Collection University of Gothenburg (CCUG) (CCUG 28802) | |
68379 | Automatically annotated from API Coryne | |||
68382 | Automatically annotated from API zym | |||
96030 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID51710.1 |