Strain identifier
BacDive ID: 139530
Type strain: 
Species: Acinetobacter soli
Strain history: CIP <- 2012, A. Nemec, Inst. Pasteur, Paris, France: strain NIPH 2899
NCBI tax ID(s): 1217677 (strain), 487316 (species)
version 8.1 (current version)
General
@ref: 41856
BacDive-ID: 139530
keywords: genome sequence, Bacteria, mesophilic, Gram-negative
description: Acinetobacter soli CIP 110476 is a mesophilic, Gram-negative bacterium of the family Moraxellaceae.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1217677 | strain |
| 487316 | species |
strain history
| @ref | history |
|---|---|
| 41856 | 2012, A. Nemec, Inst. Pasteur, Paris, France: strain NIPH 2899 |
| 41856 | CIP <- 2012, A. Nemec, Inst. Pasteur, Paris, France: strain NIPH 2899 |
doi: 10.13145/bacdive139530.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Moraxellaceae
- genus: Acinetobacter
- species: Acinetobacter soli
- full scientific name: Acinetobacter soli Kim et al. 2009
@ref: 41856
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Moraxellaceae
genus: Acinetobacter
species: Acinetobacter soli
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence | cell shape | motility |
|---|---|---|---|---|
| 69480 | negative | 99.985 | ||
| 41856 | negative | oval-shaped | yes |
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 41856 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
| 41856 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
- @ref: 41856
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.998 |
Isolation, sampling and environmental information
isolation
| @ref | geographic location | country | origin.country | continent | sample type | isolation date |
|---|---|---|---|---|---|---|
| 41856 | Praha | Czech Republic | CZE | Europe | ||
| 41856 | Prague | Czech Republic | CZE | Europe | Human, Sputum | 2005 |
Safety information
risk assessment
- @ref: 41856
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Acinetobacter soli NIPH 2899 | GCA_000368725 | scaffold | ncbi | 1217677 |
| 66792 | Acinetobacter soli NIPH 2899 | 1217677.3 | wgs | patric | 1217677 |
| 66792 | Acinetobacter soli NIPH 2899 | 2565956697 | draft | img | 1217677 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 90.776 | no |
| flagellated | no | 94.938 | no |
| gram-positive | no | 97.91 | no |
| anaerobic | no | 98.335 | no |
| aerobic | yes | 92.977 | no |
| halophile | no | 78.351 | no |
| spore-forming | no | 96.912 | no |
| thermophile | no | 99.815 | yes |
| glucose-util | no | 55.53 | no |
| glucose-ferment | no | 89.531 | no |
External links
@ref: 41856
culture collection no.: CIP 110476, NIPH 2899
straininfo link
- @ref: 96015
- straininfo: 413607
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 41856 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110476 | Collection of Institut Pasteur (CIP 110476) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 96015 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID413607.1 |