Strain identifier

BacDive ID: 139521

Type strain: Yes

Species: Flavobacterium banpakuense

Strain Designation: 15F3

Strain history: CIP <- 2013, J. Kim, Calgary Univ., Calgary, Canada: strain 15F3

NCBI tax ID(s): 659444 (species)

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General

@ref: 41805

BacDive-ID: 139521

keywords: 16S sequence, Bacteria, mesophilic, Gram-negative, rod-shaped

description: Flavobacterium banpakuense 15F3 is a mesophilic, Gram-negative, rod-shaped bacterium of the family Flavobacteriaceae.

NCBI tax id

  • NCBI tax id: 659444
  • Matching level: species

strain history

@refhistory
418052013, J. Kim, Calgary Univ., Calgary, Canada: strain 15F3
67770S. Kanaya 15F3.
41805CIP <- 2013, J. Kim, Calgary Univ., Calgary, Canada: strain 15F3

doi: 10.13145/bacdive139521.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Flavobacterium
  • species: Flavobacterium banpakuense
  • full scientific name: Flavobacterium banpakuense Kim et al. 2011

@ref: 41805

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Flavobacterium

species: Flavobacterium banpakuense

strain designation: 15F3

type strain: yes

Morphology

cell morphology

  • @ref: 41805
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
41805MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
41805CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
41805positivegrowth30mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-6

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation date
41805OsakaJapanJPNAsia
67770OsakaJapanJPNAsiaLeaf-and branch compost at EXPO Park
41805EXPO park , OsakaJapanJPNAsiaEnvironment, Leaf and branch compost2008-10-01

taxonmaps

  • @ref: 69479
  • File name: preview.99_10581.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_66;96_207;97_5673;98_7880;99_10581&stattab=map
  • Last taxonomy: Flavobacterium
  • 16S sequence: GQ281770
  • Sequence Identity:
  • Total samples: 78
  • soil counts: 27
  • aquatic counts: 36
  • animal counts: 7
  • plant counts: 8

Safety information

risk assessment

  • @ref: 41805
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 67770
  • description: Flavobacterium banpakuense strain 15F3 16S ribosomal RNA gene, partial sequence
  • accession: GQ281770
  • length: 1472
  • database: ena
  • NCBI tax ID: 659444

External links

@ref: 41805

culture collection no.: CIP 110594, JCM 16466, KACC 14225

straininfo link

  • @ref: 96008
  • straininfo: 413907

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny20693364Flavobacterium banpakuense sp. nov., isolated from leaf-and-branch compost.Kim JJ, Jin HM, Lee HJ, Jeon CO, Kanaya E, Koga Y, Takano K, Kanaya SInt J Syst Evol Microbiol10.1099/ijs.0.022467-02010Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacterium/*classification/genetics/isolation & purification, Japan, Molecular Sequence Data, *Phylogeny, Pigmentation, Plant Leaves, Plant Stems, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny29464361Flavobacterium chungangensis sp. nov., a Bacterium Isolated from Soil of Chinese Cabbage Garden.Huq MA, Akter S, Lee SYCurr Microbiol10.1007/s00284-018-1456-62018Bacterial Typing Techniques, Base Composition, Brassica/*growth & development, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Flavobacterium/classification/genetics/*isolation & purification/metabolism, Gardens, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Soil MicrobiologyMetabolism

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
41805Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110594Collection of Institut Pasteur (CIP 110594)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
96008Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID413907.1