Strain identifier

BacDive ID: 139493

Type strain: Yes

Species: Acinetobacter vivianii

Strain history: CIP <- 2012, A. Nemec, Inst. Pasteur, Paris, France: strain NIPH 2168 <- P. Bouvet 1240

NCBI tax ID(s): 1776742 (species)

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General

@ref: 41738

BacDive-ID: 139493

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, coccus-shaped, colony-forming

description: Acinetobacter vivianii CIP 110483 is an obligate aerobe, mesophilic, Gram-negative bacterium that forms circular colonies.

NCBI tax id

  • NCBI tax id: 1776742
  • Matching level: species

strain history

  • @ref: 41738
  • history: CIP <- 2012, A. Nemec, Inst. Pasteur, Paris, France: strain NIPH 2168 <- P. Bouvet 1240

doi: 10.13145/bacdive139493.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Acinetobacter
  • species: Acinetobacter vivianii
  • full scientific name: Acinetobacter vivianii Nemec et al. 2016

@ref: 41738

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Acinetobacter

species: Acinetobacter vivianii

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotility
43666negativecoccus-shaped
41738negativeoval-shapedno

colony morphology

@refcolony sizecolony colorcolony shapeincubation periodmedium used
436661.5-2 mmGrey-white, slightly opaquecircular1 dayTryptic Soy Agar
634501 day

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
41738MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
43666BHIyes
43666Tryptic Soy Agaryes
41738CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
41738positivegrowth30mesophilic
43666positivegrowth15-37
63450positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
43666obligate aerobe
63450aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4366615708trans-aconitate-assimilation
4366662517tricarballylate-assimilation
43666620642,3-butanediol-growth
43666391504-oxopentanoate-growth
4366630719citraconate-growth
4366618391D-gluconate-growth
4366617634D-glucose-growth
4366616236ethanol-growth
4366618295histamine-growth
4366630849L-arabinose-growth
4366630924L-tartrate-growth
436665291gelatin-hydrolysis
4366617128adipate+assimilation
4366678208azelaate+assimilation
4366616988D-ribose+assimilation
4366658044gentisate+assimilation
4366617859glutaric acid+assimilation
4366617148putrescine+assimilation
4366617634D-glucose+builds acid from
4366616865gamma-aminobutyric acid+carbon source
43666178794-hydroxybenzoate+carbon source
4366616150benzoate+carbon source
4366616958beta-alanine+carbon source
4366616947citrate+carbon source
4366615588D-malate+carbon source
4366624996lactate+carbon source
4366616467L-arginine+carbon source
4366629985L-glutamate+carbon source
4366615971L-histidine+carbon source
4366615603L-leucine+carbon source
4366615729L-ornithine+carbon source
4366617295L-phenylalanine+carbon source
4366615792malonate+carbon source
4366618401phenylacetate+carbon source
4366618123trigonelline+carbon source

enzymes

@refvalueactivityec
43666cytochrome oxidase-1.9.3.1
43666catalase+1.11.1.6

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typesampling date
41738LeidenNetherlandsNLDEurope
43666University Hospital of LeidenNetherlandsNLDEuropeA human clinical specimen
63450LeidenNetherlandsNLDEuropeHuman1990
41738LeidenNetherlandsNLDEuropeHuman

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Infection#Medical environment#Clinic
#Infection#Patient#Specimen

Safety information

risk assessment

  • @ref: 41738
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

16S sequences

  • @ref: 43666
  • description: 16S rRNA gene sequence
  • accession: KT997477
  • database: nuccore

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acinetobacter vivianii CCM 8642GCA_014635885contigncbi1776742
66792Acinetobacter vivianii NIPH 2168GCA_000369705scaffoldncbi1776742
66792Acinetobacter sp. NIPH 21681217706.3wgspatric1217706
66792Acinetobacter vivianii strain CCM 86421776742.3wgspatric1776742
66792Acinetobacter sp. NIPH 21682565956661draftimg1217706

GC content

  • @ref: 43666
  • GC-content: 44.68

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno91.458no
flagellatedno94.493no
gram-positiveno97.686yes
anaerobicno98.562no
halophileno84.687no
spore-formingno96.348no
thermophileno99.901yes
glucose-utilno83.158yes
aerobicyes93.79yes
glucose-fermentno87.666no

External links

@ref: 41738

culture collection no.: CIP 110483, NIPH 2168, RUH 65, CCUG 67967, CCM 8642

straininfo link

  • @ref: 95983
  • straininfo: 410068

literature

  • topic: Phylogeny
  • Pubmed-ID: 26822020
  • title: Taxonomy of haemolytic and/or proteolytic strains of the genus Acinetobacter with the proposal of Acinetobacter courvalinii sp. nov. (genomic species 14 sensu Bouvet & Jeanjean), Acinetobacter dispersus sp. nov. (genomic species 17), Acinetobacter modestus sp. nov., Acinetobacter proteolyticus sp. nov. and Acinetobacter vivianii sp. nov.
  • authors: Nemec A, Radolfova-Krizova L, Maixnerova M, Vrestiakova E, Jezek P, Sedo O
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000932
  • year: 2016
  • mesh: Acinetobacter/*classification/genetics, Bacterial Typing Techniques, DNA, Bacterial/genetics, Genes, Bacterial, *Phylogeny, Sequence Analysis, DNA, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
41738Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110483Collection of Institut Pasteur (CIP 110483)
43666Alexandr Nemec, Lenka Radolfova-Krizova, Martina Maixnerova, Eliska Vrestiakova, Petr Jezek, Ondrej SedoTaxonomy of haemolytic and/or proteolytic strains of the genus Acinetobacter with the proposal of Acinetobacter courvalinii sp. nov. (genomic species 14 sensu Bouvet & Jeanjean), Acinetobacter dispersus sp. nov. (genomic species 17), Acinetobacter modestus sp. nov., Acinetobacter proteolyticus sp. nov. and Acinetobacter vivianii sp. nov.10.1099/ijsem.0.000932IJSEM 66: 1673-1685 201626822020
63450Curators of the CCUGhttps://www.ccug.se/strain?id=67967Culture Collection University of Gothenburg (CCUG) (CCUG 67967)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
95983Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID410068.1