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Strain identifier

BacDive ID: 139492

Type strain: Yes

Species: Acinetobacter modestus

Strain history: 2012, A. Nemec, Inst. Pasteur, Paris, France: strain NIPH 236

NCBI tax ID(s): 1776740 (species)

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General

@ref: 41737

BacDive-ID: 139492

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, coccus-shaped, colony-forming

description: Acinetobacter modestus CIP 110444 is an obligate aerobe, mesophilic, Gram-negative bacterium that forms circular colonies.

NCBI tax id

  • NCBI tax id: 1776740
  • Matching level: species

strain history: 2012, A. Nemec, Inst. Pasteur, Paris, France: strain NIPH 236

doi: 10.13145/bacdive139492.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Acinetobacter
  • species: Acinetobacter modestus
  • full scientific name: Acinetobacter modestus Nemec et al. 2016

@ref: 41737

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Moraxellaceae

genus: Acinetobacter

species: Acinetobacter modestus

type strain: yes

Morphology

cell morphology

@refgram staincell shapeconfidence
43666negativecoccus-shaped
69480negative99.275

colony morphology

@refcolony sizecolony colorcolony shapeincubation periodmedium used
436661-1.5 mmGrey-white, slightly opaquecircular1 dayTryptic Soy Agar
634471 day

Culture and growth conditions

culture medium

@refnamegrowthcomposition
41737MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
43666BHIyes
43666Tryptic Soy Agaryes

culture temp

@refgrowthtypetemperaturerange
41737positivegrowth30mesophilic
43666positivegrowth15-37
63447positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
43666obligate aerobe
63447aerobe

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 98.662

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 98.509

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4366617634D-glucose-builds acid from
43666620642,3-butanediol-growth
4366616865gamma-aminobutyric acid-growth
43666178794-hydroxybenzoate-growth
43666391504-oxopentanoate-growth
4366617128adipate-growth
4366678208azelaate-growth
4366616958beta-alanine-growth
4366630719citraconate-growth
4366616947citrate-growth
4366618391D-gluconate-growth
4366617634D-glucose-growth
4366616988D-ribose-growth
4366624996lactate-growth
4366658044gentisate-growth
4366617859glutaric acid-growth
4366618295histamine-growth
4366630849L-arabinose-growth
4366629991L-aspartate-growth
4366615603L-leucine-growth
4366615729L-ornithine-growth
4366617295L-phenylalanine-growth
4366630924L-tartrate-growth
4366615792malonate-growth
4366618401phenylacetate-growth
4366617148putrescine-growth
4366615708trans-aconitate-growth
4366662517tricarballylate-growth
4366616765tryptamine-growth
436665291gelatin-hydrolysis
4366616150benzoate+carbon source
4366616236ethanol+carbon source
4366616467L-arginine+carbon source
4366629985L-glutamate+carbon source
4366615971L-histidine+carbon source
4366618123trigonelline+carbon source

enzymes

@refvalueactivityec
43666cytochrome oxidase-1.9.3.1
43666catalase+1.11.1.6

Isolation, sampling and environmental information

isolation

@refgeographic locationcountryorigin.countrycontinentsample typeisolation datesampling date
41737PfibramCzech RepublicCZEEurope
43666Piribram Regional HospitalCzech RepublicCZEEuropeThe urine of a female injured in a traffic accident1993
63447PribramCzech RepublicCZEEuropeHuman urine,female patient1993

isolation source categories

Cat1Cat2Cat3
#Host#Human#Female
#Host Body Product#Fluids#Urine

Sequence information

16S sequences

  • @ref: 43666
  • description: 16S rRNA gene sequence
  • accession: KT997474
  • database: nuccore

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acinetobacter modestus CCM 8639GCA_014636095scaffoldncbi1776740
66792Acinetobacter sp. NIPH 236 NIPH 236GCA_000367965scaffoldncbi1217711
66792Acinetobacter modestus strain CCM 86391776740.3wgspatric1776740
66792Acinetobacter sp. NIPH 2361217711.3wgspatric1217711
66792Acinetobacter sp. NIPH 2362565956686draftimg1217711
66792Chitinophagaceae bacterium UBA3961 UBA3961GCA_002385265scaffoldpatric1951555
66792Lachnospiraceae bacterium UBA6403 UBA6403GCA_002437435scaffoldpatric1952110

GC content

  • @ref: 43666
  • GC-content: 41.24

External links

@ref: 41737

culture collection no.: CIP 110444, NIPH 236, CCUG 67964, CCM 8639

literature

  • topic: Phylogeny
  • Pubmed-ID: 26822020
  • title: Taxonomy of haemolytic and/or proteolytic strains of the genus Acinetobacter with the proposal of Acinetobacter courvalinii sp. nov. (genomic species 14 sensu Bouvet & Jeanjean), Acinetobacter dispersus sp. nov. (genomic species 17), Acinetobacter modestus sp. nov., Acinetobacter proteolyticus sp. nov. and Acinetobacter vivianii sp. nov.
  • authors: Nemec A, Radolfova-Krizova L, Maixnerova M, Vrestiakova E, Jezek P, Sedo O
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000932
  • year: 2016
  • mesh: Acinetobacter/*classification/genetics, Bacterial Typing Techniques, DNA, Bacterial/genetics, Genes, Bacterial, *Phylogeny, Sequence Analysis, DNA, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
41737Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/8304 Collection of Institut Pasteur (CIP 110444)
43666Alexandr Nemec, Lenka Radolfova-Krizova, Martina Maixnerova, Eliska Vrestiakova, Petr Jezek, Ondrej SedoTaxonomy of haemolytic and/or proteolytic strains of the genus Acinetobacter with the proposal of Acinetobacter courvalinii sp. nov. (genomic species 14 sensu Bouvet & Jeanjean), Acinetobacter dispersus sp. nov. (genomic species 17), Acinetobacter modestus sp. nov., Acinetobacter proteolyticus sp. nov. and Acinetobacter vivianii sp. nov.10.1099/ijsem.0.000932IJSEM 66: 1673-1685 201626822020
63447Curators of the CCUGhttps://www.ccug.se/strain?id=67964Culture Collection University of Gothenburg (CCUG) (CCUG 67964)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes