Strain identifier

BacDive ID: 139473

Type strain: No

Species: Serratia marcescens

Strain Designation: 8K

Strain history: CIP <- 1994, ATCC <- NRRL B-1481 <- P. Middaugh: strain 8K

NCBI tax ID(s): 615 (species)

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General

@ref: 41699

BacDive-ID: 139473

keywords: genome sequence, Bacteria, facultative anaerobe, mesophilic, motile

description: Serratia marcescens 8K is a facultative anaerobe, mesophilic, motile bacterium of the family Yersiniaceae.

NCBI tax id

  • NCBI tax id: 615
  • Matching level: species

strain history

  • @ref: 41699
  • history: CIP <- 1994, ATCC <- NRRL B-1481 <- P. Middaugh: strain 8K

doi: 10.13145/bacdive139473.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Yersiniaceae
  • genus: Serratia
  • species: Serratia marcescens
  • full scientific name: Serratia marcescens Bizio 1823 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Serratia marcescens subsp. sakuensis

@ref: 41699

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Yersiniaceae

genus: Serratia

species: Serratia marcescens

strain designation: 8K

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes98.305
6948099.963negative
41699nonegativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
41699MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
41699CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
41699CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
41699positivegrowth30mesophilic
41699positivegrowth10-41
41699nogrowth5psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 41699
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.657

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4169929864mannitol+fermentation
4169916947citrate+carbon source
4169917632nitrate+reduction
4169916301nitrite-reduction
4169915792malonate-assimilation
41699132112sodium thiosulfate-builds gas from
4169917234glucose+degradation

antibiotic resistance

  • @ref: 41699
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 41699
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
4169915688acetoin+
4169917234glucose-

enzymes

@refvalueactivityec
41699oxidase-
41699beta-galactosidase+3.2.1.23
41699alcohol dehydrogenase-1.1.1.1
41699gelatinase+
41699catalase+1.11.1.6
41699lysine decarboxylase+4.1.1.18
41699ornithine decarboxylase+4.1.1.17
41699tryptophan deaminase-
41699urease-3.5.1.5

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample type
41699United KingdomGBREurope
41699United KingdomGBREuropeUnknown source

Safety information

risk assessment

  • @ref: 41699
  • biosafety level: 1
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Serratia marcescens ATCC 14041GCA_000695485contigncbi615
66792Serratia marcescens strain ATCC 14041615.95wgspatric615
66792Serratia marcescens ATCC 140412579778661draftimg615

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno98.095no
anaerobicno98.007no
halophileno93.531no
spore-formingno94.912no
glucose-utilyes94.836no
thermophileno99.347yes
flagellatedno59.393no
aerobicyes92.707no
motileyes90.041no
glucose-fermentyes90.574no

External links

@ref: 41699

culture collection no.: CIP 103959, ATCC 14041, NRRL B-1481

straininfo link

  • @ref: 95968
  • straininfo: 35957

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Genetics10550795Serratia marcescens keratitis: strain-specific corneal pathogenesis in rabbits.Hume EB, Conerly LL, Moreau JM, Cannon BM, Engel LS, Stroman DW, Hill JM, O'Callaghan RJCurr Eye Res10.1076/ceyr.19.6.525.52831999Animals, Cornea/microbiology/pathology, Eye Infections, Bacterial/microbiology, Genotype, Keratitis/*microbiology, Metalloendopeptidases/metabolism, Rabbits, Serratia Infections/microbiology, Serratia marcescens/enzymology/genetics/*pathogenicity, Species Specificity, VirulencePhylogeny
Genetics24948764Genome Sequence of meso-2,3-Butanediol-Producing Strain Serratia marcescens ATCC 14041.Li L, Wang Y, Li K, Su F, Ma C, Xu PGenome Announc10.1128/genomeA.00590-142014

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
41699Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103959Collection of Institut Pasteur (CIP 103959)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
95968Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID35957.1