Strain identifier

BacDive ID: 139471

Type strain: No

Species: Shigella flexneri

Strain Designation: 2457T

Strain history: CIP <- 2002, D. Mazel, Inst. Pasteur, Paris <- M. Chandler <- M. Venkatesan: strain 2457T

NCBI tax ID(s): 623 (species)

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General

@ref: 41696

BacDive-ID: 139471

keywords: Bacteria, facultative anaerobe, mesophilic, Gram-negative, rod-shaped

description: Shigella flexneri 2457T is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from Human, Feces.

NCBI tax id

  • NCBI tax id: 623
  • Matching level: species

strain history

  • @ref: 41696
  • history: CIP <- 2002, D. Mazel, Inst. Pasteur, Paris <- M. Chandler <- M. Venkatesan: strain 2457T

doi: 10.13145/bacdive139471.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Shigella
  • species: Shigella flexneri
  • full scientific name: Shigella flexneri Castellani and Chalmers 1919 (Approved Lists 1980)

@ref: 41696

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Enterobacteriaceae

genus: Shigella

species: Shigella flexneri

strain designation: 2457T

type strain: no

Morphology

cell morphology

  • @ref: 41696
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
41696MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
41696CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
41696positivegrowth30mesophilic
41696positivegrowth30-41
41696nogrowth5psychrophilic
41696nogrowth10psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 41696
  • oxygen tolerance: facultative anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4169629864mannitol+fermentation
4169616947citrate-carbon source
4169617234glucose+fermentation
4169617716lactose-fermentation
4169617632nitrate+reduction
4169616301nitrite-reduction
4169615792malonate-assimilation
41696132112sodium thiosulfate-builds gas from

antibiotic resistance

  • @ref: 41696
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 41696
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
4169615688acetoin-
4169617234glucose-

enzymes

@refvalueactivityec
41696oxidase-
41696beta-galactosidase-3.2.1.23
41696alcohol dehydrogenase-1.1.1.1
41696gelatinase-
41696catalase+1.11.1.6
41696lysine decarboxylase-4.1.1.18
41696ornithine decarboxylase-4.1.1.17
41696phenylalanine ammonia-lyase-4.3.1.24
41696tryptophan deaminase-
41696urease-3.5.1.5

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
41696--++--+--+----+------------------+---------------+----++---++--------------+---++--------+---+-----

Isolation, sampling and environmental information

isolation

  • @ref: 41696
  • sample type: Human, Feces

Safety information

risk assessment

  • @ref: 41696
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

External links

@ref: 41696

culture collection no.: CIP 107659, ATCC 700930

straininfo link

  • @ref: 95966
  • straininfo: 247964

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
41696Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107659Collection of Institut Pasteur (CIP 107659)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
95966Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID247964.1