Strain identifier

BacDive ID: 139463

Type strain: No

Species: Escherichia coli

Strain Designation: Canioni

Strain history: CIP <- 1962, L. Le Minor, Inst. Pasteur, Paris, France <- J. Taylor, Lister Inst., UK: strain Canioni

NCBI tax ID(s): 562 (species)

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General

@ref: 41684

BacDive-ID: 139463

keywords: genome sequence, Bacteria, facultative anaerobe, mesophilic, motile

description: Escherichia coli Canioni is a facultative anaerobe, mesophilic, motile bacterium that was isolated from Human gastro-enteritis.

NCBI tax id

  • NCBI tax id: 562
  • Matching level: species

strain history

  • @ref: 41684
  • history: CIP <- 1962, L. Le Minor, Inst. Pasteur, Paris, France <- J. Taylor, Lister Inst., UK: strain Canioni

doi: 10.13145/bacdive139463.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Escherichia
  • species: Escherichia coli
  • full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacillus coli

@ref: 41684

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Enterobacteriaceae

genus: Escherichia

species: Escherichia coli

strain designation: Canioni

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes96.32
6948099.981negative
41684negativerod-shaped

colony morphology

  • @ref: 41684

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
41684MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
41684CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
41684CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
41684positivegrowth30mesophilic
41684positivegrowth30-41
41684nogrowth5psychrophilic
41684nogrowth10psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 41684
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.681

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4168429864mannitol+fermentation
4168416947citrate-carbon source
416844853esculin-hydrolysis
4168417234glucose+fermentation
4168417716lactose+fermentation
4168417632nitrate+reduction
4168416301nitrite+reduction
4168415792malonate-assimilation
41684132112sodium thiosulfate-builds gas from

antibiotic resistance

  • @ref: 41684
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

  • @ref: 41684
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
4168415688acetoin-
4168417234glucose-

enzymes

@refvalueactivityec
41684oxidase-
41684beta-galactosidase+3.2.1.23
41684alcohol dehydrogenase-1.1.1.1
41684gelatinase-
41684catalase+1.11.1.6
41684lysine decarboxylase+4.1.1.18
41684ornithine decarboxylase-4.1.1.17
41684phenylalanine ammonia-lyase-4.3.1.24
41684tryptophan deaminase-
41684urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase+3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
41684-+---++-+-++-+++----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
41684+++++++++++++++--+++++--+----+-+-+--+------++---++---+++---++--------------+---++-+---+--+--+++---+

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinentisolation date
45542Human gastro-enteritis1948
41684Human, Rectal swabLondonUnited KingdomGBREurope1948

isolation source categories

Cat1Cat2
#Host Body-Site#Gastrointestinal tract
#Host#Human
#Infection#Inflammation

Safety information

risk assessment

  • @ref: 41684
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Escherichia coli NCTC8623GCA_900636175completencbi562
66792Escherichia coli strain NCTC8623562.39532completepatric562
66792Escherichia coli sv. O125:K70(B15):H19 NCTC86232870469529completeimg562

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno61.084no
gram-positiveno98.356no
anaerobicno94.473no
aerobicyes86.316no
halophileno90.643no
spore-formingno93.504no
thermophileno98.993no
glucose-utilyes94.649no
motileyes88.243no
glucose-fermentyes92.989no

External links

@ref: 41684

culture collection no.: CIP 62.24, NCTC 8623, CCUG 11424

straininfo link

  • @ref: 95962
  • straininfo: 53702

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
41684Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2062.24Collection of Institut Pasteur (CIP 62.24)
45542Curators of the CCUGhttps://www.ccug.se/strain?id=11424Culture Collection University of Gothenburg (CCUG) (CCUG 11424)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
95962Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID53702.1