Strain identifier
BacDive ID: 139459
Type strain:
Species: Legionella fairfieldensis
Strain Designation: 1725-Aus-E
Strain history: CIP <- 1997, CDC <- W.L. Thacker: strain 1725-Aus-E <- L. Hawes
NCBI tax ID(s): 1408444 (strain), 45064 (species)
General
@ref: 41679
BacDive-ID: 139459
keywords: genome sequence, Bacteria, microaerophile, mesophilic, Gram-negative
description: Legionella fairfieldensis 1725-Aus-E is a microaerophile, mesophilic, Gram-negative bacterium of the family Legionellaceae.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1408444 | strain |
45064 | species |
strain history
- @ref: 41679
- history: CIP <- 1997, CDC <- W.L. Thacker: strain 1725-Aus-E <- L. Hawes
doi: 10.13145/bacdive139459.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Legionellales
- family: Legionellaceae
- genus: Legionella
- species: Legionella fairfieldensis
- full scientific name: Legionella fairfieldensis Thacker et al. 1991
@ref: 41679
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Legionellales
family: Legionellaceae
genus: Legionella
species: Legionella fairfieldensis
strain designation: 1725-Aus-E
type strain: yes
Morphology
cell morphology
@ref | gram stain | confidence | cell shape | motility |
---|---|---|---|---|
69480 | negative | 99.999 | ||
41679 | negative | rod-shaped | yes |
colony morphology
- @ref: 63321
- incubation period: 3-5 days
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
41679 | MEDIUM 23 - for Afipia and Legionella | yes | Distilled water make up to (1000.000 ml);Legionella agar (37.000 g);Legionella - enrichment mixture (10.000 ml) | |
41679 | CIP Medium 23 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=23 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
41679 | positive | growth | 37 | mesophilic |
63321 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 63321
- oxygen tolerance: microaerophile
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.995 |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
41679 | 17632 | nitrate | - | reduction |
41679 | 16301 | nitrite | - | reduction |
metabolite production
- @ref: 41679
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
41679 | oxidase | - | |
41679 | catalase | + | 1.11.1.6 |
41679 | urease | - | 3.5.1.5 |
68382 | alkaline phosphatase | - | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | - | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
41679 | - | - | + | + | - | - | - | - | - | - | + | + | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | geographic location | country | origin.country | continent | sample type | sampling date |
---|---|---|---|---|---|---|
41679 | Fairfield, Victoria | Australia | AUS | Australia and Oceania | ||
63321 | Victoria,Fairfield | Australia | AUS | Australia and Oceania | Water,cooling tower | 1991 |
41679 | Fairfield, Victoria | Australia | AUS | Australia and Oceania | Environment, Water, cooling tower |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Built environment | #Water reservoir (Aquarium/pool) |
#Environmental | #Aquatic |
Safety information
risk assessment
- @ref: 41679
- biosafety level: 2
- biosafety level comment: Risk group (French classification)
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Legionella fairfieldensis ATCC 49588 | GCA_000621525 | scaffold | ncbi | 1408444 |
66792 | Legionella fairfieldensis ATCC 49588 | 1408444.3 | wgs | patric | 1408444 |
66792 | Legionella fairfieldensis ATCC 49588 | 2558860982 | draft | img | 1408444 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | yes | 81.194 | no |
flagellated | no | 82.607 | no |
gram-positive | no | 98.771 | no |
anaerobic | no | 98.681 | yes |
halophile | no | 84.941 | no |
spore-forming | no | 93.417 | no |
thermophile | no | 93.444 | yes |
glucose-util | yes | 60.176 | no |
aerobic | no | 91.68 | no |
glucose-ferment | no | 88.785 | no |
External links
@ref: 41679
culture collection no.: CIP 105266, ATCC 49588, NCTC 12488, CCUG 31235, CCUG 66341, NCTC 14288
straininfo link
- @ref: 95959
- straininfo: 42567
literature
- topic: Phylogeny
- Pubmed-ID: 2037664
- title: Legionella fairfieldensis sp. nov. isolated from cooling tower waters in Australia.
- authors: Thacker WL, Benson RF, Hawes L, Gidding H, Dwyer B, Mayberry WR, Brenner DJ
- journal: J Clin Microbiol
- DOI: 10.1128/jcm.29.3.475-478.1991
- year: 1991
- mesh: Australia, DNA, Bacterial/genetics, Fatty Acids/analysis, Legionella/classification/*isolation & purification/physiology, Serotyping, Species Specificity, *Water Microbiology
- topic2: Enzymology
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
41679 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105266 | Collection of Institut Pasteur (CIP 105266) | |
63321 | Curators of the CCUG | https://www.ccug.se/strain?id=66341 | Culture Collection University of Gothenburg (CCUG) (CCUG 66341) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
68382 | Automatically annotated from API zym | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
95959 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID42567.1 |