Strain identifier

BacDive ID: 139456

Type strain: No

Species: Escherichia coli

Strain Designation: 1064

Strain history: CIP <- 1952, L. Le Minor, Inst. Pasteur, Paris, France <- F. Kauffmann, Stat. Ser., Copenhagen, Denmark: strain 1064

NCBI tax ID(s): 562 (species)

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General

@ref: 41665

BacDive-ID: 139456

keywords: genome sequence, Bacteria, facultative anaerobe, mesophilic, motile

description: Escherichia coli 1064 is a facultative anaerobe, mesophilic, motile bacterium of the family Enterobacteriaceae.

NCBI tax id

  • NCBI tax id: 562
  • Matching level: species

strain history

  • @ref: 41665
  • history: CIP <- 1952, L. Le Minor, Inst. Pasteur, Paris, France <- F. Kauffmann, Stat. Ser., Copenhagen, Denmark: strain 1064

doi: 10.13145/bacdive139456.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Escherichia
  • species: Escherichia coli
  • full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacillus coli

@ref: 41665

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Enterobacteriaceae

genus: Escherichia

species: Escherichia coli

strain designation: 1064

type strain: no

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes96.431
6948099.994negative
41665yesnegativerod-shaped

colony morphology

  • @ref: 41665
  • hemolysis ability: 1

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
41665MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
41665CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
41665positivegrowth30mesophilic
41665positivegrowth30-41
41665nogrowth5psychrophilic
41665nogrowth10psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 41665
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.867

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4166529864mannitol+fermentation
4166516947citrate-carbon source
416654853esculin-hydrolysis
4166517234glucose+fermentation
4166517716lactose+fermentation
4166517632nitrate+reduction
4166516301nitrite+reduction
4166515792malonate-assimilation
41665132112sodium thiosulfate-builds gas from
4166517234glucose+degradation

antibiotic resistance

  • @ref: 41665
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 41665
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
4166515688acetoin-
4166517234glucose+

enzymes

@refvalueactivityec
41665oxidase-
41665beta-galactosidase+3.2.1.23
41665alcohol dehydrogenase-1.1.1.1
41665gelatinase-
41665catalase+1.11.1.6
41665lysine decarboxylase+4.1.1.18
41665ornithine decarboxylase-4.1.1.17
41665phenylalanine ammonia-lyase-4.3.1.24
41665tryptophan deaminase-
41665urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase+3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
41665-++--+----++++++----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
41665++++++++++++++++-+-++++++-+--+-+-+-----+---+++--++---+++-+-++--------------+---++-+---+--++++++-+-+

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample type
41665United KingdomGBREurope
41665United KingdomGBREuropeHuman, Feces (child)

Safety information

risk assessment

  • @ref: 41665
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Escherichia coli NCTC8959GCA_900448265contigncbi562
66792Escherichia coli strain NCTC8959562.34150wgspatric562

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno98.112no
anaerobicno94.337no
halophileno90.027no
spore-formingno94.462no
glucose-utilyes93.53no
thermophileno99.278no
aerobicyes86.205no
motileyes89.748no
flagellatedno54.446no
glucose-fermentyes93.343no

External links

@ref: 41665

culture collection no.: CIP 52.170, NCTC 8959

straininfo link

  • @ref: 95956
  • straininfo: 68571

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
41665Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2052.170Collection of Institut Pasteur (CIP 52.170)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
95956Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID68571.1