Strain identifier

BacDive ID: 13944

Type strain: Yes

Species: Magnetospirillum gryphiswaldense

Strain Designation: MSR-1

Culture col. no.: DSM 6361, IFO 15271, NBRC 15271

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General

@ref: 2618

BacDive-ID: 13944

DSM-Number: 6361

keywords: microaerophile, Bacteria, 16S sequence, genome sequence, mesophilic

description: Magnetospirillum gryphiswaldense MSR-1 is a microaerophile, mesophilic bacterium that was isolated from river sediment.

strain history: <- D. Schüler, Max Planck Inst. Biochem., Martinsried, Germany; MSR-1 <- D. Schüler, Univ. Greifswald, Germany {1990}

doi: 10.13145/bacdive13944.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Rhodospirillaceae
  • genus: Magnetospirillum
  • species: Magnetospirillum gryphiswaldense
  • full scientific name: Magnetospirillum gryphiswaldense Schleifer et al. 1992

@ref: 2618

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodospirillales

family: Rhodospirillaceae

genus: Magnetospirillum

species: Magnetospirillum gryphiswaldense

full scientific name: Magnetospirillum gryphiswaldense Schleifer et al. 1992

strain designation: MSR-1

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 2618
  • name: MAGNETOSPIRILLUM MEDIUM (DSMZ Medium 380), with strain-specific modifications, microaerophilic
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium380.pdf

culture temp

  • @ref: 2618
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 2618
  • oxygen tolerance: microaerophile

Isolation, sampling and environmental information

isolation

  • @ref: 2618
  • sample type: river sediment
  • geographic location: Greifswald, Ryck
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#River (Creek)
#Environmental#Aquatic#Sediment

Safety information

risk assessment

  • @ref: 2618
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Magnetospirillum gryphiswaldense gene for 16S rRNA, partial sequence, strain: NBRC 15271AB6808211409ena55518
2618M.gryphiswaldense SSU rRNA gene, partialY101091443ena431944

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Magnetospirillum gryphiswaldense R3/S1GCA_002995535completencbi55518
66792Magnetospirillum gryphiswaldense strain R3/S155518.3completepatric55518
66792Magnetospirillum gryphiswaldense JGI SC39-F21 (unscreened)2663763569permanentimg55518
66792Magnetospirillum gryphiswaldense JGI SC39-F21 (contamination screened)2663763568permanentimg55518

GC content

  • @ref: 2618
  • GC-content: 63.3
  • method: sequence analysis

External links

@ref: 2618

culture collection no.: DSM 6361, IFO 15271, NBRC 15271

straininfo link

@refpassport
20218http://www.straininfo.net/strains/159984
20218http://www.straininfo.net/strains/159985
20218http://www.straininfo.net/strains/487793

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2618Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6361)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6361
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)